View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_53 (Length: 214)
Name: NF17474_low_53
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 38941576 - 38941755
Alignment:
| Q |
19 |
ctgaaaatggccatttggctgcttctcaagccattccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaa |
118 |
Q |
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| T |
38941576 |
ctgaaaatggccatttggctgcttctcaagccattccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaa |
38941675 |
T |
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| Q |
119 |
caaccttcaagctcaatcatccaccaatggagccacaagatccaccattgctcagcacaacaccaaccaagagatcaaag |
198 |
Q |
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| T |
38941676 |
caaccttgaagctcaatcatccaccaatggagccacaagatccaccattgctcagcacaacaccaaccaagagatcaaag |
38941755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 38947516 - 38947674
Alignment:
| Q |
40 |
cttctcaagccattccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttcaagctcaatcatc |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38947516 |
cttctcaagccattccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttgaagctcaatcatc |
38947615 |
T |
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| Q |
140 |
caccaatggagccacaagatccaccattgctcagcacaacaccaaccaagagatcaaag |
198 |
Q |
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| T |
38947616 |
caccaatggagccacaagatccaccattgctcagcacaacaccaaccaagagatcaaag |
38947674 |
T |
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