View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17474_low_7 (Length: 513)
Name: NF17474_low_7
Description: NF17474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17474_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 108 - 498
Target Start/End: Original strand, 53671918 - 53672307
Alignment:
| Q |
108 |
acctgaatgcttggatatgaattaaattacttattactcagatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
207 |
Q |
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| T |
53671918 |
acctgaatgcttggatatgaattaaattacttattactc-gatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
53672016 |
T |
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| Q |
208 |
tgcaattgtgttgttttaatatatcatcttctggc-ttttttcatataaaaaagaaaatctatcttaaccatccatccattgtgaagattaattgttctc |
306 |
Q |
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| T |
53672017 |
tgcaattgtgttgttttaatatatcatcttctggccttttttcatataaaaaagaaaata-atcttaaccatccatccattgtgaagattaattgttctc |
53672115 |
T |
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| Q |
307 |
atgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttgtaatcttcaacttcattacaacatactcctctctgaaac |
406 |
Q |
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| T |
53672116 |
atgctttcatattctaacattctcatatgttattaagttacaaaaataatcagccaacttctaatcttcaacttcattacaacatactcctctctgaaac |
53672215 |
T |
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| Q |
407 |
ctcaaatattgtatatgccaacaaactttgaaactaatctacttttcatcctcacaaataatcctctagagatatgtctgaggggacatcat |
498 |
Q |
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| T |
53672216 |
ctcaaatattgtatatgccaacaaactttgaaactaatctacttttcatcctcacaaataatcctctagagatatgtctgaggggacatcat |
53672307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 53674335 - 53674381
Alignment:
| Q |
38 |
tttctcttaatcttaggaccagattaaggtgtatatgtcatgcttga |
84 |
Q |
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| T |
53674335 |
tttctcttaatcttaggaccagatgaaggtgtatatgtcaagcttga |
53674381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 53671870 - 53671907
Alignment:
| Q |
16 |
ctgtgattatcttaacttggaatttctcttaatcttag |
53 |
Q |
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| T |
53671870 |
ctgtgattatcttaacttggaatttctcttaatcttag |
53671907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 28957328 - 28957371
Alignment:
| Q |
138 |
ttattactcagatataaattagcacacttgctaaaattgtatca |
181 |
Q |
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| T |
28957328 |
ttattacttcgatataaattagtacacttgctaaaattgtatca |
28957371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 6374789 - 6374834
Alignment:
| Q |
138 |
ttattactcagatataaattagcacacttgctaaaattgtatcaat |
183 |
Q |
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| T |
6374789 |
ttattacttcgatataaattagtatacttgctaaaattgtatcaat |
6374834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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