View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17475_high_1 (Length: 769)

Name: NF17475_high_1
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17475_high_1
NF17475_high_1
[»] chr6 (19 HSPs)
chr6 (17-637)||(30754396-30755016)
chr6 (293-451)||(22442449-22442607)
chr6 (292-339)||(14487174-14487221)
chr6 (293-339)||(15482501-15482547)
chr6 (293-392)||(12466177-12466276)
chr6 (294-421)||(22595121-22595249)
chr6 (294-417)||(31162516-31162641)
chr6 (295-421)||(16374795-16374923)
chr6 (292-408)||(23295667-23295787)
chr6 (291-334)||(19728996-19729039)
chr6 (291-337)||(12975028-12975074)
chr6 (292-334)||(13122392-13122434)
chr6 (293-339)||(35010940-35010986)
chr6 (471-562)||(13123120-13123213)
chr6 (382-451)||(15482582-15482651)
chr6 (526-572)||(15482828-15482876)
chr6 (294-339)||(17858009-17858054)
chr6 (294-339)||(19627828-19627873)
chr6 (293-341)||(23090351-23090400)
[»] scaffold0070 (1 HSPs)
scaffold0070 (293-526)||(46567-46795)
[»] chr7 (25 HSPs)
chr7 (293-417)||(14280061-14280185)
chr7 (294-421)||(14278125-14278254)
chr7 (484-643)||(17999768-17999930)
chr7 (292-421)||(14974185-14974314)
chr7 (292-421)||(15403661-15403790)
chr7 (293-337)||(13487797-13487841)
chr7 (293-413)||(17151062-17151182)
chr7 (293-416)||(22522168-22522292)
chr7 (292-421)||(39293366-39293497)
chr7 (292-417)||(44306896-44307023)
chr7 (323-418)||(17999338-17999433)
chr7 (524-600)||(4548270-4548349)
chr7 (292-422)||(9128922-9129053)
chr7 (293-396)||(6461412-6461516)
chr7 (295-390)||(17492882-17492978)
chr7 (295-390)||(17560236-17560332)
chr7 (292-335)||(11622173-11622218)
chr7 (525-633)||(19432392-19432503)
chr7 (293-340)||(8807402-8807449)
chr7 (553-628)||(15817837-15817912)
chr7 (293-339)||(6210571-6210617)
chr7 (292-335)||(11227469-11227514)
chr7 (295-340)||(12246471-12246516)
chr7 (294-339)||(14252961-14253006)
chr7 (294-339)||(45148081-45148126)
[»] chr4 (19 HSPs)
chr4 (299-600)||(13933034-13933342)
chr4 (300-600)||(11923727-11924032)
chr4 (293-413)||(20847323-20847444)
chr4 (293-421)||(13908698-13908827)
chr4 (486-598)||(12410241-12410356)
chr4 (295-421)||(15215505-15215633)
chr4 (296-421)||(41918415-41918541)
chr4 (293-333)||(12407885-12407925)
chr4 (342-417)||(12410090-12410165)
chr4 (294-421)||(40902363-40902492)
chr4 (295-415)||(10116003-10116124)
chr4 (295-355)||(1920060-1920120)
chr4 (295-334)||(14616514-14616553)
chr4 (471-521)||(12458615-12458665)
chr4 (298-336)||(15676507-15676545)
chr4 (293-340)||(31934410-31934459)
chr4 (293-335)||(12459161-12459205)
chr4 (294-339)||(19699231-19699276)
chr4 (294-339)||(19709816-19709861)
[»] chr3 (18 HSPs)
chr3 (314-577)||(30083892-30084160)
chr3 (293-441)||(21094245-21094393)
chr3 (293-421)||(25105581-25105711)
chr3 (295-415)||(17385272-17385393)
chr3 (292-421)||(30177319-30177448)
chr3 (293-451)||(10711626-10711784)
chr3 (292-416)||(11400999-11401124)
chr3 (293-419)||(25487031-25487157)
chr3 (293-402)||(8897908-8898019)
chr3 (294-421)||(15551125-15551254)
chr3 (294-416)||(31413908-31414031)
chr3 (294-339)||(54040205-54040250)
chr3 (294-339)||(54049492-54049537)
chr3 (291-335)||(13438556-13438600)
chr3 (301-335)||(14262445-14262479)
chr3 (293-339)||(17391838-17391884)
chr3 (298-336)||(25606936-25606974)
chr3 (294-335)||(2278823-2278864)
[»] scaffold0186 (1 HSPs)
scaffold0186 (293-415)||(11453-11577)
[»] chr5 (10 HSPs)
chr5 (293-421)||(17301885-17302013)
chr5 (294-421)||(14343506-14343634)
chr5 (296-335)||(26058400-26058439)
chr5 (294-421)||(11765051-11765180)
chr5 (292-338)||(25340929-25340975)
chr5 (298-336)||(18532420-18532458)
chr5 (291-337)||(19318119-19318165)
chr5 (298-336)||(22055384-22055422)
chr5 (293-339)||(34937949-34937995)
chr5 (89-134)||(32038789-32038834)
[»] scaffold0111 (1 HSPs)
scaffold0111 (293-442)||(28766-28915)
[»] chr1 (5 HSPs)
chr1 (293-415)||(11845036-11845158)
chr1 (294-337)||(21199238-21199281)
chr1 (342-416)||(20821287-20821361)
chr1 (294-339)||(20252696-20252741)
chr1 (294-339)||(33395838-33395883)
[»] chr8 (16 HSPs)
chr8 (293-451)||(15062299-15062458)
chr8 (293-421)||(31195903-31196032)
chr8 (294-421)||(17500432-17500561)
chr8 (293-379)||(24270653-24270739)
chr8 (292-417)||(20177657-20177784)
chr8 (292-417)||(20222384-20222511)
chr8 (294-339)||(16216343-16216388)
chr8 (526-600)||(24270322-24270400)
chr8 (559-640)||(16216023-16216105)
chr8 (300-334)||(16724489-16724523)
chr8 (292-338)||(18032855-18032901)
chr8 (294-340)||(25608639-25608685)
chr8 (294-339)||(16041164-16041209)
chr8 (294-339)||(16042840-16042885)
chr8 (294-339)||(18610758-18610803)
chr8 (292-337)||(24623310-24623355)
[»] chr2 (15 HSPs)
chr2 (294-417)||(45619698-45619823)
chr2 (294-421)||(22331081-22331209)
chr2 (296-398)||(23154460-23154562)
chr2 (296-398)||(23565717-23565819)
chr2 (525-603)||(18332191-18332271)
chr2 (292-335)||(28579512-28579557)
chr2 (293-421)||(22576453-22576582)
chr2 (294-336)||(43938189-43938233)
chr2 (293-340)||(18331984-18332031)
chr2 (489-544)||(23154655-23154710)
chr2 (489-544)||(23565912-23565967)
chr2 (298-336)||(24342999-24343037)
chr2 (294-339)||(7513680-7513725)
chr2 (352-421)||(34135957-34136026)
chr2 (294-339)||(42180027-42180072)
[»] scaffold0431 (1 HSPs)
scaffold0431 (486-600)||(13893-14010)
[»] scaffold0115 (1 HSPs)
scaffold0115 (294-421)||(20134-20262)
[»] scaffold0086 (2 HSPs)
scaffold0086 (292-338)||(11059-11105)
scaffold0086 (486-600)||(11260-11377)
[»] scaffold0468 (1 HSPs)
scaffold0468 (316-417)||(12642-12745)
[»] scaffold0317 (1 HSPs)
scaffold0317 (293-417)||(15508-15634)
[»] scaffold0333 (1 HSPs)
scaffold0333 (316-413)||(1590-1689)
[»] scaffold0090 (1 HSPs)
scaffold0090 (292-417)||(36417-36544)
[»] scaffold0017 (1 HSPs)
scaffold0017 (292-421)||(11041-11172)
[»] scaffold0508 (1 HSPs)
scaffold0508 (291-337)||(5850-5896)
[»] scaffold0113 (1 HSPs)
scaffold0113 (293-335)||(23921-23963)
[»] scaffold0123 (1 HSPs)
scaffold0123 (292-408)||(33757-33877)
[»] scaffold0024 (1 HSPs)
scaffold0024 (292-337)||(101106-101151)
[»] scaffold0009 (1 HSPs)
scaffold0009 (292-340)||(256037-256085)
[»] scaffold0171 (1 HSPs)
scaffold0171 (293-332)||(3244-3283)
[»] scaffold0005 (1 HSPs)
scaffold0005 (295-334)||(200824-200863)
[»] scaffold0396 (1 HSPs)
scaffold0396 (294-340)||(164-210)
[»] scaffold0338 (1 HSPs)
scaffold0338 (483-600)||(18506-18626)
[»] scaffold0001 (1 HSPs)
scaffold0001 (292-335)||(420934-420979)
[»] scaffold0161 (1 HSPs)
scaffold0161 (293-339)||(3817-3865)
[»] scaffold0138 (3 HSPs)
scaffold0138 (294-339)||(26804-26849)
scaffold0138 (294-339)||(27819-27864)
scaffold0138 (294-339)||(39815-39860)


Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 17 - 637
Target Start/End: Original strand, 30754396 - 30755016
Alignment:
Q  17 acctcaggcggccttcttgccattacgtgtacaaattgaacattatccttgttgaaagaatcattcacccttgggtgccccccacggttatctgtgacaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30754396 acctcaggcggccttcttgccattacgtgtacaaattgaacattatccttgttgaaagaatcattcgcccttgggtgccccccacggttatctgtgacaa 30754495  T
Q  117 aaatactaggttgtgaataaagagtagaaggtacatgttgcataggtaccaattgaacatattaaggtcttgtcgatgcagtgattattggctttgatta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30754496 aaatactaggttgtgaataaagagtagaaggtacatgttgcataggtaccaattgaacatattaaggtcttatcgatgcagtgattactggctttgatta 30754595  T
Q  217 acaatgcttttcagattttggattccttgtactctttgtgggatattggctcatttggtgattaacatgtgggatatggtaccacatgcatgtagaggtg 316  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30754596 acgatgctttccagattttggattccttgtactctttgtgggatattggctcatttgatgattaacatgtgggatatggtaccacatgcatgtagaggtg 30754695  T
Q  317 tctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgtgat 416  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  30754696 tctataacattgcatgcacttgaaattgatgaaaagagtaatatttgactatgtgacttggtgtatatgtgtattgatgaaacttgatgaatgttgtgat 30754795  T
Q  417 tatgtagaattgcgtacttgtatatgatgcttgatatgctatgattgaagtacgatattcacatggtgttagtattttaggaatattgaatatgtacatg 516  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30754796 tatgtagaattgtgtacttgtatatgatgcttgatatcctatgattgaagtatgatattcacatggtgttagtattttaggaatattgaatatgtacatg 30754895  T
Q  517 tgtatctattgaaatccttcaatgcttttacttgattatattttatgtggaatattatctatccccaagtagtcgtttggttgatcgaatgcttatttga 616  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||| ||  ||| |||||||    
T  30754896 tgtatctattgaaatccttcaatatttttacttgattatattttatgtggaatattatctaacctcaagtggtcgtttgattgaccgtctgcctatttga 30754995  T
Q  617 ataaatgggtaggcggcgtgt 637  Q
    |||||||||||||||||||||    
T  30754996 ataaatgggtaggcggcgtgt 30755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 293 - 451
Target Start/End: Complemental strand, 22442607 - 22442449
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||| |||  |||||  ||| ||| ||||||||| || ||||||  ||||||||||     
T  22442607 tggtaccacatgcatgtagaggtgtctacaacattgcatgcccttgagatttgtgaaacatgtcatacttgactatgtgatttggtgattatgtgcatta 22442508  T
Q  393 atgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgat 451  Q
     ||||| | | ||||||||| || || || |||  ||| ||||||||||| ||||||||    
T  22442507 gtgaaattaggtgaatgttgggactaagtggaaacgcggacttgtatatgttgcttgat 22442449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 14487174 - 14487221
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14487174 atggtaccacatgcatgtagaggtgtctagaacattgcatgcacttga 14487221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 15482501 - 15482547
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  15482501 tggtaccacatgcatgtagaggtgtctagaacattgcatgcacttga 15482547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 12466177 - 12466276
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||||||||| ||| |||| | |||||||||||||||||||||||| |||| ||||| |||| | | |||| |||| || ||||||  |||||||||||    
T  12466177 tggtaccacatacatctagaagagtctagaacattgcatgcatttgagattggtgaaatgtgtcacacttgattatgtgatttggtgattatgtgcattg 12466276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 22595121 - 22595249
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||||| ||  ||||||||    
T  22595121 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-taattgtgcatt 22595219  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| || |||| ||||||||||    
T  22595220 ggtgaaatttggtggatgtagtgattatgt 22595249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 417
Target Start/End: Original strand, 31162516 - 31162641
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatt--tgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | |||||||||||||||||||||  || |||||||||   |||| ||| |||| |||| |||||| || || ||||||||    
T  31162516 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgtgtaattgatgaggcgtgtcataattgaatatgtgacttgatgaatttgtgcatt 31162615  T
Q  392 gatgaaacttgatgaatgttgtgatt 417  Q
    | || || ||| ||||||||||||||    
T  31162616 ggtggaatttggtgaatgttgtgatt 31162641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 421
Target Start/End: Complemental strand, 16374923 - 16374795
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa--attgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||| ||||||| |||| | |||||||||||||||||||||||||   |||||||   |||| ||| |||| |||| ||||||||  || |||||||||    
T  16374923 gtaccgcatgcatctagaagagtctagaacattgcatgcatttgaatggttgatgagttgtgtcataattgaatatgtgacttggtcaatttgtgcattg 16374824  T
Q  393 atgaaacttgatgaatgttgtgattatgt 421  Q
      |||| |||  |||||||||||| ||||    
T  16374823 gggaaatttgtcgaatgttgtgatcatgt 16374795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 23295787 - 23295667
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcatttgaaatt-gatgaaaa-gtgtaatatttgactatgcgacttggtgtatatgtg 387  Q
    |||||||||||||||| |||||  | |||||||||||| ||||||| ||| ||| | |||||  |||| ||| |||||| || || ||||||  ||||||    
T  23295787 atggtaccacatgcatctagagaagagtctagaacattacatgcatctgatatttggtgaaattgtgtcatacttgactgtgtgatttggtgattatgtg 23295688  T
Q  388 cattgatgaaacttgatgaat 408  Q
    ||||||||||||||| |||||    
T  23295687 cattgatgaaacttggtgaat 23295667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 19728996 - 19729039
Alignment:
Q  291 tatggtaccacatgcatgtagaggtgtctagaacattgcatgca 334  Q
    ||||||||||||||||| |||| | |||||||||||||||||||    
T  19728996 tatggtaccacatgcatctagaagagtctagaacattgcatgca 19729039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 12975074 - 12975028
Alignment:
Q  291 tatggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    ||||||||||||||||| ||||  ||||||||||||||||| |||||    
T  12975074 tatggtaccacatgcatctagaaatgtctagaacattgcatacattt 12975028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 13122392 - 13122434
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgca 334  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  13122392 atggtactacatgcatgtagacgtgtcttgaacattgcatgca 13122434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 35010940 - 35010986
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    ||||||| ||||||| |||| | ||||||||||||||||||||||||    
T  35010940 tggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 35010986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 562
Target Start/End: Original strand, 13123120 - 13123213
Alignment:
Q  471 atattcacatggtgttagtattttaggaatattgaatatgtacatgtgtatctattgaaatccttcaatgct-ttta-cttgattatattttat 562  Q
    ||||||||||  ||||||||||||| ||||  |||  ||||||||||||||  ||||||||| || |||||| ||||  |||||||||||||||    
T  13123120 atattcacattatgttagtattttacgaatgatgagcatgtacatgtgtattaattgaaatcattgaatgctatttattttgattatattttat 13123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 15482582 - 15482651
Alignment:
Q  382 tatgtgcattgatgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgat 451  Q
    ||||||||||| ||||| |||||| ||||||||| ||||| ||| || | |||| |||||| ||||||||    
T  15482582 tatgtgcattggtgaaatttgatgcatgttgtgactatgtggaaatgtggacttatatatgttgcttgat 15482651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 15482828 - 15482876
Alignment:
Q  526 tgaaatccttcaatgcttttacttgattatatt--ttatgtggaatatt 572  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  15482828 tgaaatccttgaatgcttatacttgattatatttattatgtggaatatt 15482876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 17858009 - 17858054
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||| ||||||||| |||| | ||||||||||||||||||||||||    
T  17858009 ggtatcacatgcatttagaagagtctagaacattgcatgcatttga 17858054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 19627873 - 19627828
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  19627873 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19627828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 23090351 - 23090400
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtct-agaacattgcatgcatttgaaa 341  Q
    |||||||||||| ||||||| |||||| ||||||||||||||| ||||||    
T  23090351 tggtaccacatgaatgtagaagtgtctaagaacattgcatgcacttgaaa 23090400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 293 - 526
Target Start/End: Complemental strand, 46795 - 46567
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||| || |||||| |||| ||  |||| |||| ||||||||||||||||||||||    
T  46795 tggtaccacatgcatgtagaaatgtctagtacattgcatgcatttgaagtttatgaaatgtgtcatgcttgaatatgtgacttggtgtatatgtgcattg 46696  T
Q  393 atgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgatatgctatgat-tgaagtacgatattcacatggtgttagtat 491  Q
    ||  || ||| || |||| ||||| ||||  | ||| | ||||||||||| |||||||||| ||||| | |||  ||  |||||||| | | ||||||||    
T  46695 at--aatttggtgcatgtcgtgataatgtgaatttgtggacttgtatatgttgcttgatatactatggtatga--ta--atattcacgtcgagttagtat 46602  T
Q  492 tttaggaatattgaatatgtacatgtgtatctatt 526  Q
    | ||| ||| |||||||||||||||||||| ||||    
T  46601 tctagaaatgttgaatatgtacatgtgtatttatt 46567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 14280061 - 14280185
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||| | | |||| |||| ||||||||| ||| ||||||||    
T  14280061 tggtaccacatggatgtagagatgtctagaacattgcatgcatttgaagttgatgaaatgtgtcacacttgaatatgtgacttggtgaataagtgcattg 14280160  T
Q  393 atgaaacttgatgaatgttgtgatt 417  Q
     ||||| || |||||||||||||||    
T  14280161 gtgaaattttatgaatgttgtgatt 14280185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 14278125 - 14278254
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||| || || ||||||||    
T  14278125 ggtaccacatgcatttagaagagtctagaacattgcatgcatttgagtaattgatgagttgtgtcataattgaatatgtgacttgatgaatttgtgcatt 14278224  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | || || ||| ||||||||||||||||||    
T  14278225 ggtggaatttggtgaatgttgtgattatgt 14278254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 484 - 643
Target Start/End: Original strand, 17999768 - 17999930
Alignment:
Q  484 gttagtattttaggaatattgaatatgtacatgtgtatctattgaaa-tccttcaatgcttttacttgattatattttat---gtggaatattatctatc 579  Q
    ||||| ||| ||||||| ||||||||||| ||||| || |||| ||| ||||| |||||||| ||||||| ||| |||||   ||||||||||||||| |    
T  17999768 gttagaattctaggaatgttgaatatgtatatgtgaatttatttaaaatccttgaatgcttt-acttgataataatttattacgtggaatattatctaac 17999866  T
Q  580 cccaagtagtcgtttggttgatcgaatgcttatttgaataaatgggtaggcggcgtgtaggact 643  Q
    ||  ||| ||||||||||||||||  ||| |||||| || ||||||||| ||||||||| ||||    
T  17999867 cctcagtggtcgtttggttgatcgcctgcctatttgtatgaatgggtagacggcgtgtaagact 17999930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 14974185 - 14974314
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||||| ||||   ||||||||||||||| ||||||||| ||| ||| |  ||| ||  || | |||| ||||||||| ||||||| |||    
T  14974185 atggtaccacatgcatctagaatagtctagaacattgcaagcatttgaatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtatt 14974284  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||||||||||||||||    
T  14974285 ggtgaaatttggtgaatgttgtgattatgt 14974314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 15403661 - 15403790
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||||| ||||   ||||||||||||||| ||||||||| ||| ||| |  ||| ||  || | |||| ||||||||| ||||||| |||    
T  15403661 atggtaccacatgcatctagaatagtctagaacattgcaagcatttgaatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtatt 15403760  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||||||||||||||||    
T  15403761 ggtgaaatttggtgaatgttgtgattatgt 15403790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 13487841 - 13487797
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  13487841 tggtaccacatgcatgtagaagtgtctagaacattgcatgcattt 13487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 17151062 - 17151182
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||||||||||||| || | | ||||| ||||||||||||||| || |||| ||||| |||| || ||||| |||| || ||||||  ||| |||||||    
T  17151062 tggtaccacatgcatctaaaagagtctaaaacattgcatgcattagagattggtgaaatgtgtcatgtttgaatatgtgatttggtggttatttgcattg 17151161  T
Q  393 atgaaacttgatgaatgttgt 413  Q
     ||||| ||| ||||||||||    
T  17151162 gtgaaatttggtgaatgttgt 17151182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 293 - 416
Target Start/End: Original strand, 22522168 - 22522292
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtct-agaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||  ||| | || | ||| |||| | || |||||| || ||||   ||||    
T  22522168 tggtaccacatgcatgtagaagtgtctaagaacattgcatgcacttgaattttgtgagatgtatcataattgaatgtgtgacttgttgaatatacacatt 22522267  T
Q  392 gatgaaacttgatgaatgttgtgat 416  Q
    ||||||| |||||||||||||||||    
T  22522268 gatgaaatttgatgaatgttgtgat 22522292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 39293366 - 39293497
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    |||||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||| || || ||||||    
T  39293366 atggtaccgcatgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaatttgtgca 39293465  T
Q  390 ttgatgaaacttgatgaatgttgtgattatgt 421  Q
    ||| |  || | | ||||||||||||||||||    
T  39293466 ttggtagaattcggtgaatgttgtgattatgt 39293497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 44306896 - 44307023
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||  |||||||||   || | ||| |||| |||| |||||| || || ||||||    
T  44306896 atggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaatttgtgca 44306995  T
Q  390 ttgatgaaacttgatgaatgttgtgatt 417  Q
    ||| || || | | ||||||||||||||    
T  44306996 ttggtggaattcggtgaatgttgtgatt 44307023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 17999338 - 17999433
Alignment:
Q  323 acattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgtgatta 418  Q
    |||||||||||| ||||| ||| ||||| |||| ||| |||| |||| ||| || || |||||||||||| ||||| ||| |||||||||||||||    
T  17999338 acattgcatgcacttgaagttggtgaaatgtgtcatacttgaatatgtgacgtgatgaatatgtgcattggtgaaatttggtgaatgttgtgatta 17999433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 524 - 600
Target Start/End: Complemental strand, 4548349 - 4548270
Alignment:
Q  524 attgaaatccttcaatgcttttacttgattatatt---ttatgtggaatattatctatccccaagtagtcgtttggttga 600  Q
    |||||||||||| |||||||||  |||||||||||   ||||||||||||||||||  |||| | |||||||||||||||    
T  4548349 attgaaatccttgaatgcttttctttgattatattgtattatgtggaatattatctcacccctaatagtcgtttggttga 4548270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 422
Target Start/End: Original strand, 9128922 - 9129053
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    |||||||||||||||| |||| | ||||||||||||| ||||||||||  | ||| |||   |||| ||| |||| |||| ||||||||| || ||||||    
T  9128922 atggtaccacatgcatctagaagagtctagaacattgtatgcatttgaatatttggtgagtcgtgtcataattgaatatgtgacttggtgaatttgtgca 9129021  T
Q  390 ttgatgaaacttgatgaatgttgtgattatgta 422  Q
    ||| | ||| |||  ||||||||||||||||||    
T  9129022 ttggtaaaatttg-ggaatgttgtgattatgta 9129053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 6461412 - 6461516
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga-aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    ||||||||||||||| | || | ||||| |||||| ||||||||||| | ||| ||||| |||| ||| ||||||||| || ||||||  ||||||||||    
T  6461412 tggtaccacatgcatcttgaagagtctaaaacatttcatgcatttgatagttggtgaaatgtgtcatacttgactatgtgaattggtgattatgtgcatt 6461511  T
Q  392 gatga 396  Q
    |||||    
T  6461512 gatga 6461516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 17492882 - 17492978
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgac-ttggtgtatatgtgcat 390  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||| || ||||| |||| ||| | || |||| ||| |||||| ||||||||||    
T  17492882 gtaccacatgcgtgtagcagtgtctagaacattgcatgcacttgaaaatggtgaaatgtgtcatactagaatatgtgacattggtgaatatgtgcat 17492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 17560332 - 17560236
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgac-ttggtgtatatgtgcat 390  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||| || ||||| |||| ||| | || |||| ||| |||||| ||||||||||    
T  17560332 gtaccacatgcgtgtagcagtgtctagaacattgcatgcacttgaaaatggtgaaatgtgtcatactagaatatgtgacattggtgaatatgtgcat 17560236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 11622173 - 11622218
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  11622173 atggtaccacatgcatgtagagatgtgtctagaacattgcatgcat 11622218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 633
Target Start/End: Original strand, 19432392 - 19432503
Alignment:
Q  525 ttgaaatccttcaatgcttttacttgattatattttatg---tggaatattatctatccccaagtagtcgtttggttgatcgaatgcttatttgaataaa 621  Q
    |||||||| || |||||| ||  |||||||||||||||    |||||||||||||| | ||| |||||||||||||||| ||  ||| |||||| || ||    
T  19432392 ttgaaatcattgaatgctatttattgattatattttattatatggaatattatctaactccacgtagtcgtttggttgaccgtctgcctatttggatgaa 19432491  T
Q  622 tgggtaggcggc 633  Q
    ||||||| ||||    
T  19432492 tgggtagacggc 19432503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 8807449 - 8807402
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    |||||||||||| ||||||| |||||||| |||||||||||| |||||    
T  8807449 tggtaccacatgtatgtagaagtgtctaggacattgcatgcacttgaa 8807402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 628
Target Start/End: Original strand, 15817837 - 15817912
Alignment:
Q  553 tatattttatgtggaatattatctatccccaagtagtcgtttggttgatcgaatgcttatttgaataaatgggtag 628  Q
    |||||| | |||||||||||||||| || | ||| ||||||||||||| ||  ||| ||||||||| |||||||||    
T  15817837 tatattatttgtggaatattatctaacctccagtggtcgtttggttgaccgtctgcctatttgaatgaatgggtag 15817912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 6210571 - 6210617
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||||| |||||| |||| | ||||||||||||||||||||||||    
T  6210571 tggtaccatatgcatctagaagagtctagaacattgcatgcatttga 6210617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 11227514 - 11227469
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcat 335  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||    
T  11227514 atggtaccacatgcgtgtagagtcgtgtctagaacattgcatgcat 11227469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 12246516 - 12246471
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    ||||| ||||||| |||| | |||||||||||||||||||||||||    
T  12246516 gtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 12246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 14252961 - 14253006
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  14252961 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 14253006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 45148126 - 45148081
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  45148126 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 45148081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 299 - 600
Target Start/End: Complemental strand, 13933342 - 13933034
Alignment:
Q  299 cacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaa 398  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||  ||||| |||| ||| |||| |||| ||||| ||| ||||||| ||| ||||||    
T  13933342 cacatgcatgtagaagtgtctggaacattgcatgcatttgaagttagtgaaatgtgtcatacttgaatatgtgacttcgtgaatatgtgtatttatgaaa 13933243  T
Q  399 cttgatgaatgttgtgattatgtagaa--ttgcgtacttgtatatgatgcttgatatgctatgattgaagt---acgatattcacatggtgttagtattt 493  Q
     | ||||||||||||||| |||| |||  ||| | |||||  |||| |||||||||| ||||||| |  ||   |  ||||| |  ||| ||||  |||     
T  13933242 ttcgatgaatgttgtgatgatgt-gaattttgtggacttgcgtatgttgcttgatatactatgatggtggtgtgataatatttatgtggagttaacattc 13933144  T
Q  494 taggaatattgaatatgtacatgtgtatctatt--gaaatccttcaatgcttttacttgattatatt--ttatgtggaatattatctatccccaagtagt 589  Q
    ||||||| |||||||||||||||||||| ||||   |||||||| |||  ||||| |||||||| ||  ||||||| ||||||||||| |||| ||| ||    
T  13933143 taggaatgttgaatatgtacatgtgtatttatttgaaaatccttgaat-attttatttgattatgtttattatgtgaaatattatctaacccccagtggt 13933045  T
Q  590 cgtttggttga 600  Q
    |||||||||||    
T  13933044 cgtttggttga 13933034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 300 - 600
Target Start/End: Original strand, 11923727 - 11924032
Alignment:
Q  300 acatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaac 399  Q
    ||||||||||||| ||| |||||||||||||||||  |||| ||| ||||| |||| ||| |||| | || ||||||||| |||||||||||| | | |     
T  11923727 acatgcatgtagaagtgcctagaacattgcatgcacgtgaagttggtgaaatgtgtcatacttgaatgtgtgacttggtgaatatgtgcattggttagat 11923826  T
Q  400 ttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgatatgctatgattgaagt---acgatattcacatggtgttagtattttag 496  Q
    ||| ||||||||||||| ||||  | ||| | |||| |||||| || ||||||| ||||||| |  ||   |  |||||||  ||| |||| ||   |||    
T  11923827 ttggtgaatgttgtgatgatgtgaatttgtggacttatatatgttgattgatatactatgatggtggtgtgataatattcatgtggagttaataacctag 11923926  T
Q  497 gaatattgaatatgtacatgtgtatcta-ttgaaatccttcaatgcttttacttgattat-att-ttatgtggaatattatctatccccaagtagtcgtt 593  Q
    |||| ||||||||||||| |||||| || ||||||||||| |||| ||||| |||||||| ||| |||||| ||||| |||||| |||| ||| ||||||    
T  11923927 gaatgttgaatatgtacaagtgtatttatttgaaatccttgaatg-ttttatttgattatgattattatgtagaataatatctaacccccagtggtcgtt 11924025  T
Q  594 tggttga 600  Q
    |||||||    
T  11924026 tggttga 11924032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 413
Target Start/End: Complemental strand, 20847444 - 20847323
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa-attgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||| || |||| | ||||||||||||||||||||||||  |||| ||||| |||| ||| ||||||||| |  ||||||  ||||||||||    
T  20847444 tggtaccacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttgactatgtgtattggtgattatgtgcatt 20847345  T
Q  392 gatgaaacttgatgaatgttgt 413  Q
    ||||||| ||||||||||||||    
T  20847344 gatgaaatttgatgaatgttgt 20847323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 13908698 - 13908827
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa-attgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||| |||| ||| |||| || |  |||  ||| |||| | ||||    
T  13908698 tggtaccacatgcaggtagaggtgtctagaacattacatgcatttgaatattggtgaaacgtgtcatacttgaatacgtaactcagtgaatatatacatt 13908797  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| |||||||| |||||||||    
T  13908798 ggtgaaaattggtgaatgttatgattatgt 13908827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 486 - 598
Target Start/End: Original strand, 12410241 - 12410356
Alignment:
Q  486 tagtattttaggaatattgaatatgtacatgtgtatctatt-gaaatccttcaatgcttttacttgattatattttatgtg--gaatattatctatcccc 582  Q
    ||||||| ||||||  ||| |||||||||||| ||| |||| ||||||||| ||| |||||| ||||||||||||| ||||  |||||||||||| ||||    
T  12410241 tagtattctaggaaagttggatatgtacatgtatatttatttgaaatccttaaatacttttatttgattatattttttgtgtggaatattatctaacccc 12410340  T
Q  583 aagtagtcgtttggtt 598  Q
     ||| |||||||||||    
T  12410341 tagtggtcgtttggtt 12410356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 421
Target Start/End: Original strand, 15215505 - 15215633
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||  |||||||||   |||| ||| |||| ||||||||||| || || |||||||||    
T  15215505 gtaccgcatgcatctagaagagtctagaacattgcatgtatttgagtaattgatgagccgtgtcataattgaatatgcgacttgatgaatttgtgcattg 15215604  T
Q  393 atgaaacttgatgaatgttgtgattatgt 421  Q
     || || | | ||||||||||||||||||    
T  15215605 gtggaattcggtgaatgttgtgattatgt 15215633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 421
Target Start/End: Original strand, 41918415 - 41918541
Alignment:
Q  296 taccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattga 393  Q
    |||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| |||  ||| |||| ||||||||  || |||||||||     
T  41918415 taccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataaatgaatatgtgacttggttgat-tgtgcattgg 41918513  T
Q  394 tgaaacttgatgaatgttgtgattatgt 421  Q
    ||||| ||| ||||||||||||||||||    
T  41918514 tgaaatttggtgaatgttgtgattatgt 41918541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 12407885 - 12407925
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgc 333  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12407885 tggtaccacatgcatgtagaagtgtctagaacattgcatgc 12407925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 12410090 - 12410165
Alignment:
Q  342 ttgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgtgatt 417  Q
    ||||||||| |||| ||| |||| |||| ||||||||| |||||||||||| ||||  |||||||||||| |||||    
T  12410090 ttgatgaaatgtgtcataattgaatatgtgacttggtgaatatgtgcattggtgaagtttgatgaatgttatgatt 12410165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 40902363 - 40902492
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| ||| |  || || ||||||||    
T  40902363 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacctaatgaatttgtgcatt 40902462  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | || || ||  ||||||||||||||||||    
T  40902463 ggtggaatttagtgaatgttgtgattatgt 40902492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 415
Target Start/End: Original strand, 10116003 - 10116124
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttga-aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattga 393  Q
    |||||||||||||  | | | |||||||||||||||||||||||| |||||||||||  ||| ||||||| ||||| || || |||  ||||||  | |     
T  10116003 gtaccacatgcattaaaaagagtctagaacattgcatgcatttgataattgatgaaacatgtcatatttggctatgtgaatttgtgattatgtgtgtcgg 10116102  T
Q  394 tgaaacttgatgaatgttgtga 415  Q
    ||||| ||| ||||||||||||    
T  10116103 tgaaatttggtgaatgttgtga 10116124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 1920060 - 1920120
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgt 355  Q
    ||||||||||  |||||| ||||||||||||||||||||| |||||| || ||||| ||||    
T  1920060 gtaccacatgtgtgtagaagtgtctagaacattgcatgcacttgaaaatggtgaaatgtgt 1920120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 334
Target Start/End: Complemental strand, 14616553 - 14616514
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgca 334  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  14616553 gtaccacatgcatctagaggagtctagaacattgcatgca 14616514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 12458665 - 12458615
Alignment:
Q  471 atattcacatggtgttagtattttaggaatattgaatatgtacatgtgtat 521  Q
    ||||||||||| |||||||||| |||||||  ||| |||||||||||||||    
T  12458665 atattcacatgatgttagtattctaggaatgatgagtatgtacatgtgtat 12458615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  298 ccacatgcatgtagaggtgtctagaacattgcatgcatt 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 31934459 - 31934410
Alignment:
Q  293 tggtaccacatgcatgtagag--gtgtctagaacattgcatgcatttgaa 340  Q
    |||||||||||||||||||||  ||||| |||||||||||||||| ||||    
T  31934459 tggtaccacatgcatgtagagttgtgtccagaacattgcatgcatatgaa 31934410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 12459205 - 12459161
Alignment:
Q  293 tggtaccacatgcatgtagag--gtgtctagaacattgcatgcat 335  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  12459205 tggtaccacatgcatgtagagatgtgtctagaacattacatgcat 12459161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 19699231 - 19699276
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  19699231 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19699276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 19709816 - 19709861
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  19709816 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19709861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 314 - 577
Target Start/End: Original strand, 30083892 - 30084160
Alignment:
Q  314 gtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgt 413  Q
    |||||||||||||| ||||||||||||||   |||||  ||| |||||||||||||  |||||||| |||||||||||  ||||| ||| ||||||||||    
T  30083892 gtgtctagaacatttcatgcatttgaaatcagtgaaatatgttatatttgactatgtaacttggtgaatatgtgcattagtgaaatttggtgaatgttgt 30083991  T
Q  414 gattatgtagaattgcgtacttgtatatgatgcttgatatgctatgattgaagtacgat-attcacatg-gtgttagtattttaggaatattgaatatgt 511  Q
    ||||||||  ||||| | || |||||||| | |||||||| ||  ||| |  ||| ||| ||   |||| | ||||||||  ||||||| ||||||||||    
T  30083992 gattatgtgaaattgtgaacgtgtatatgtttcttgatatactgagatggtggtatgataatattcatgtgagttagtatcgtaggaatgttgaatatgt 30084091  T
Q  512 acatgtgtatcta-ttgaaatccttcaatgcttttacttgattata---ttttatgtggaatattatcta 577  Q
    | |||||||| || |||||||| || ||||| |||| |||||||||   | |||||||||||||||||||    
T  30084092 atatgtgtatttatttgaaatctttgaatgc-tttatttgattatactttattatgtggaatattatcta 30084160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 293 - 441
Target Start/End: Original strand, 21094245 - 21094393
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||  ||||| |||| ||| || | |||| |||||||||  ||||| |||||    
T  21094245 tggtaccacatgcatgtagaagtgtctagaacattgcatgcacttgaagttagtgaaatgtgtcatacttaaatatgtgacttggtgattatgttcattg 21094344  T
Q  393 atgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatat 441  Q
     | ||| ||  ||||||||| ||||||||  ||||| | ||||||||||    
T  21094345 gttaaattttgtgaatgttgggattatgtgaaattgtggacttgtatat 21094393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 25105581 - 25105711
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcat 390  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||  | |||||||   |||| ||| |||| |||| | |||| || || |||||||    
T  25105581 tggtaccacatgcacctagaggagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatgtgccttgttgaatttgtgcat 25105680  T
Q  391 tgatgaaacttgatgaatgttgtgattatgt 421  Q
    || ||||| ||||||||||||||||||||||    
T  25105681 tggtgaaatttgatgaatgttgtgattatgt 25105711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 17385393 - 17385272
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgcatttga-aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattga 393  Q
    ||||||||||||| |||| | |||||||||||||||||||||||| ||||| ||||| |||| ||| || |||||| || || |||  |||||||||||     
T  17385393 gtaccacatgcatctagaagagtctagaacattgcatgcatttgataattggtgaaatgtgtcataattcactatgtgaattcgtgattatgtgcattgg 17385294  T
Q  394 tgaaacttgatgaatgttgtga 415  Q
    ||||| ||| ||||||||||||    
T  17385293 tgaaatttggtgaatgttgtga 17385272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 30177319 - 30177448
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||||||||| | |  ||||||||||||||||| ||||||| | |||||  ||| ||||||||||| | ||||||||| |||||| |||     
T  30177319 atggtaccacatgcatgtagtgattcctagaacattgcatgcacttgaaatcggtgaaatttgtcatatttgactaagtgacttggtgaatatgtacatc 30177418  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||| ||| ||||||||    
T  30177419 ggtgaaatttggtgaatattgcgattatgt 30177448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 451
Target Start/End: Original strand, 10711626 - 10711784
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    ||||| |||||||  ||||| | | ||| |||||||| |||| |||| ||| |||||| |||| ||| ||||||||  || |||||| ||||||||||||    
T  10711626 tggtatcacatgctggtagaagagcctacaacattgcttgcacttgagatttatgaaatgtgtcatacttgactatatgatttggtgaatatgtgcattg 10711725  T
Q  393 atgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgat 451  Q
     ||||| ||| |||||||||||| ||||| ||  || | | ||||||||| ||||||||    
T  10711726 gtgaaatttggtgaatgttgtgactatgttgatatgtgaatttgtatatgttgcttgat 10711784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 416
Target Start/End: Complemental strand, 11401124 - 11400999
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa--attgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||   ||||||||  |||| ||| || | |||| |||||| || || ||||||    
T  11401124 atggtaccacatgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataatttaatatgtgacttgatggatttgtgca 11401025  T
Q  390 ttgatgaaacttgatgaatgttgtgat 416  Q
    ||| ||||| ||| ||| |||||||||    
T  11401024 ttggtgaaa-ttgttgattgttgtgat 11400999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 419
Target Start/End: Original strand, 25487031 - 25487157
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga-aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    ||||||||||||||| ||||   |||||||||||| |||||| |||| ||||| | |   |||| ||| ||||||||| || ||||||  ||||||||||    
T  25487031 tggtaccacatgcatttagaatagtctagaacattacatgcacttgataattggttattcgtgtcatacttgactatgtgaattggtgattatgtgcatt 25487130  T
Q  392 gatgaaacttgatgaatgttgtgattat 419  Q
    ||||||| ||| ||||||||||||||||    
T  25487131 gatgaaa-ttggtgaatgttgtgattat 25487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 293 - 402
Target Start/End: Complemental strand, 8898019 - 8897908
Alignment:
Q  293 tggtaccacatgcatgtagagg--tgtctagaacattgcatgcatttga-aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    ||||||||||||||| |||||   |||||||| |||| ||||||||||| ||||| |||||  ||| ||||||||||||| | |||||||  ||||||||    
T  8898019 tggtaccacatgcatatagagtcatgtctagagcatttcatgcatttgataattggtgaaacatgtcatatttgactatgtg-cttggtgattatgtgca 8897921  T
Q  390 ttgatgaaacttg 402  Q
    ||| |||||||||    
T  8897920 ttggtgaaacttg 8897908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 15551125 - 15551254
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| |||  ||| |||| |||||| || || |||| |||    
T  15551125 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataaatgaatatgtgacttgatgaatttgtgaatt 15551224  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | || || | | ||||||||||||||||||    
T  15551225 ggtggaattcggtgaatgttgtgattatgt 15551254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 416
Target Start/End: Original strand, 31413908 - 31414031
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcattt--gaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||   ||||||||||   |||| ||| |||| |||| |||||||| ||  ||| ||||    
T  31413908 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttaaaaaattgatgagtcgtgtcataattgaatatgtgacttggt-taattgtacatt 31414006  T
Q  392 gatgaaacttgatgaatgttgtgat 416  Q
    | ||||| ||| |||||||||||||    
T  31414007 ggtgaaatttggtgaatgttgtgat 31414031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 54040205 - 54040250
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||    
T  54040205 ggtaccacatgcatctagaagagtctagaacattgcatgcatttga 54040250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 54049492 - 54049537
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||    
T  54049492 ggtaccacatgcatctagaagagtctagaacattgcatgcatttga 54049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 13438600 - 13438556
Alignment:
Q  291 tatggtaccacatgcatgtagaggtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||    
T  13438600 tatggtaccacatgcatctagaagagtctagaacattgcatgcat 13438556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 14262479 - 14262445
Alignment:
Q  301 catgcatgtagaggtgtctagaacattgcatgcat 335  Q
    |||||||||||| ||||||||||||||||||||||    
T  14262479 catgcatgtagaagtgtctagaacattgcatgcat 14262445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 17391884 - 17391838
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    ||||||||||||||| |||| | |||| |||||||||||||||||||    
T  17391884 tggtaccacatgcatctagaagagtcttgaacattgcatgcatttga 17391838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  298 ccacatgcatgtagaggtgtctagaacattgcatgcatt 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 2278864 - 2278823
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcat 335  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  2278864 ggtaccgcatgcatgtagaggtgtttagaacatagcatgcat 2278823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 11577 - 11453
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga-aattgatgaaaa-gtgtaatatttgactatgcgacttggtgtatatgtgcat 390  Q
    ||||||||||||||| |||| | |||||||| ||||||||||||||| ||||| |||||| |||| ||| ||||||||| ||||||||| ||||||||||    
T  11577 tggtaccacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcat 11478  T
Q  391 tgatgaaacttgatgaatgttgtga 415  Q
    || ||||||||| ||| | ||||||    
T  11477 tggtgaaacttgttgatttttgtga 11453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 17301885 - 17302013
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| |||  ||||| |||| ||| ||||||||| || ||||||  |||||| || |    
T  17301885 tggtaccacatgcatgtagaggtgtctagaacattgcatgtacttgagatttgtgaaacgtgtcatacttgactatgtgatttggtgattatgtgtatag 17301984  T
Q  393 atgaaacttgatgaatgttgtgattatgt 421  Q
     ||||| ||||||||||||| || |||||    
T  17301985 gtgaaatttgatgaatgttgcgaatatgt 17302013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 14343506 - 14343634
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||| |||| | |||| |||||||||||||||||||  | |||||||   |||| ||| |||| |||| ||||| || ||  ||||||||    
T  14343506 ggtaccacatgcatctagaagagtctggaacattgcatgcatttgaatagttgatgattcgtgtcataattgaatatgtgactt-gtttaattgtgcatt 14343604  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||||||||||||||||    
T  14343605 ggtgaaatttggtgaatgttgtgattatgt 14343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 26058439 - 26058400
Alignment:
Q  296 taccacatgcatgtagaggtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26058439 taccacatgcatgtagaggtgtctagaacatagcatgcat 26058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 11765051 - 11765180
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | |||||||||||| |||||||||||  |||||||||   |||| ||| |||| |||| |||||| || || ||||||||    
T  11765051 ggtaccgcatgcatctagaagagtctagaacatttcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaatttgtgcatt 11765150  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
      |  || ||| ||||||||||||||||||    
T  11765151 agtagaatttggtgaatgttgtgattatgt 11765180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 25340975 - 25340929
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttg 338  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||    
T  25340975 atggtaccacatgcatctagatgagtctagaacattgcatgcatttg 25340929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  298 ccacatgcatgtagaggtgtctagaacattgcatgcatt 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 19318119 - 19318165
Alignment:
Q  291 tatggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||||    
T  19318119 tatggtaccacatgcatctagaagagtctagaacattacatgcattt 19318165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  298 ccacatgcatgtagaggtgtctagaacattgcatgcatt 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 34937995 - 34937949
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    ||||||| ||||||| |||| | ||||||||||||||||||||||||    
T  34937995 tggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 34937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 32038834 - 32038789
Alignment:
Q  89 gggtgccccccacggttatctgtgacaaaaatactaggttgtgaat 134  Q
    ||||||| |||| ||||||||||||||| |||||||||||| ||||    
T  32038834 gggtgccacccagggttatctgtgacaataatactaggttgagaat 32038789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 442
Target Start/End: Complemental strand, 28915 - 28766
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtcta-gaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||||||||||| ||||| ||||||| ||||||| |||||| ||||| ||| ||| | |||| ||| |||| |||| |||||| || |||||||||||    
T  28915 tggtaccacatgcaggtagaagtgtctaagaacattacatgcacttgaatttggtgagatgtgtcataattgaatatgtgacttgatgaatatgtgcatt 28816  T
Q  392 gatgaaacttgatgaatgttgtgattatgtagaattgcgtacttgtatatg 442  Q
    | ||||| ||||||||||||||||| |||| |||||| |  ||||||||||    
T  28815 ggtgaaatttgatgaatgttgtgatgatgt-gaattgtggtcttgtatatg 28766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 11845158 - 11845036
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||| |||| ||||| ||||  || ||||||||| || ||||||  |||||||||||    
T  11845158 tggtaccacatgcatgtagaagtgtctagaatattgcatgcacttgagattggtgaaatgtgtcgtacttgactatgtgatttggtgattatgtgcattg 11845059  T
Q  393 atgaaacttgatgaatgttgtga 415  Q
     ||||||||| | || |||||||    
T  11845058 gtgaaacttggtcaacgttgtga 11845036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 21199238 - 21199281
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    |||||||||||||| |||| | ||||||||||||||||||||||    
T  21199238 ggtaccacatgcatctagacgagtctagaacattgcatgcattt 21199281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 20821361 - 20821287
Alignment:
Q  342 ttgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgtgat 416  Q
    ||||||||  |||| ||| |||| |||| ||||||||| || ||||||||| ||||| ||| |||||||||||||    
T  20821361 ttgatgaattgtgtcataattgaatatgtgacttggtgaatttgtgcattggtgaaatttgttgaatgttgtgat 20821287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 20252741 - 20252696
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  20252741 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 20252696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 33395883 - 33395838
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  33395883 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 33395838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 451
Target Start/End: Complemental strand, 15062458 - 15062299
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattg 392  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||| |||  ||||| |||  ||| ||||||||| |||||||||  || ||||||||    
T  15062458 tggtaccacatgcatgtagaagtgtctagaacattgcatgcacatgagatttgtgaaatgtgacatacttgactatgtgacttggtgattacgtgcattg 15062359  T
Q  393 atgaa-acttgatgaatgttgtgattatgtagaattgcgtacttgtatatgatgcttgat 451  Q
     | ||   ||| |||||||||||| ||||| |||||| | ||||||||||| || |||||    
T  15062358 gttaatttttggtgaatgttgtgactatgtggaattgtggacttgtatatgttgtttgat 15062299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 31195903 - 31196032
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcat 390  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||||| ||| |||||||    
T  31195903 tggtaccacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-tatttgtgcat 31196001  T
Q  391 tgatgaaacttgatgaatgttgtgattatgt 421  Q
    || ||||| | | ||||||||||||||||||    
T  31196002 tggtgaaattcgttgaatgttgtgattatgt 31196032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 294 - 421
Target Start/End: Complemental strand, 17500561 - 17500432
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||| || || ||||||||    
T  17500561 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagttgtgtcataattgaatatgtgacttgttgaatttgtgcatt 17500462  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||||||||||||||||    
T  17500461 ggtgaaatttggtgaatgttgtgattatgt 17500432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 24270739 - 24270653
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtg 379  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||||| ||||| |||| ||| |||| |||| || ||||||    
T  24270739 tggtatcacatgcatgtcgaagtgtctagaacattgcatgcacttgaaattggtgaaacgtgtcatacttgaatatgtgatttggtg 24270653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 20177657 - 20177784
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||  |||||||||   || | ||| |||| |||| |||||| || || ||||||    
T  20177657 atggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaatttgtgca 20177756  T
Q  390 ttgatgaaacttgatgaatgttgtgatt 417  Q
    ||| || || | | ||||||||||||||    
T  20177757 ttggtggaattcggtgaatgttgtgatt 20177784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 20222384 - 20222511
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||  |||||||||   || | ||| |||| |||| |||||| || || ||||||    
T  20222384 atggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaatttgtgca 20222483  T
Q  390 ttgatgaaacttgatgaatgttgtgatt 417  Q
    ||| || || | | ||||||||||||||    
T  20222484 ttggtggaattcggtgaatgttgtgatt 20222511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 16216388 - 16216343
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  16216388 ggtaccacatgcatgtagaggtgtctagaacattgaatgcacttga 16216343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 24270400 - 24270322
Alignment:
Q  526 tgaaatccttcaatgctt-ttacttgattatat---tttatgtggaatattatctatccccaagtagtcgtttggttga 600  Q
    |||||||||| ||||| | ||||||||||||||   ||||||| |||||||||||| |||| ||| |||||||||||||    
T  24270400 tgaaatccttgaatgcatattacttgattatatctatttatgtagaatattatctaacccccagtggtcgtttggttga 24270322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 640
Target Start/End: Complemental strand, 16216105 - 16216023
Alignment:
Q  559 ttatgtggaatattatctatccccaagtagtcgtttggttgatcgaatgcttatttgaataaatgg-gtaggcggcgtgtagg 640  Q
    ||||||||||||| ||||| || | ||| ||||||||||||||||  |||| ||||| || ||||| |||| |||||||||||    
T  16216105 ttatgtggaatataatctaacctccagtggtcgtttggttgatcgcctgctcatttgtatgaatggtgtagacggcgtgtagg 16216023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 16724523 - 16724489
Alignment:
Q  300 acatgcatgtagaggtgtctagaacattgcatgca 334  Q
    |||||||||||||||||||||||||||| ||||||    
T  16724523 acatgcatgtagaggtgtctagaacattacatgca 16724489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 18032901 - 18032855
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttg 338  Q
    |||||||||||||||| |||| | ||||||||||||||| |||||||    
T  18032901 atggtaccacatgcatctagatgagtctagaacattgcacgcatttg 18032855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 25608685 - 25608639
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    |||||| ||||||| |||| | |||||||||||||||||||||||||    
T  25608685 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 25608639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 16041164 - 16041209
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  16041164 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 16041209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 16042840 - 16042885
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  16042840 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 16042885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 18610803 - 18610758
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  18610803 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 18610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 24623355 - 24623310
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    |||||||||||||||| |||| | || |||||||||||||||||||    
T  24623355 atggtaccacatgcatctagaagagtttagaacattgcatgcattt 24623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 417
Target Start/End: Original strand, 45619698 - 45619823
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa--attgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | |||||||||||||||||||||||||   ||||||||  |||| ||| |||| || | ||||||||| || ||||||||    
T  45619698 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaatttgtgcatt 45619797  T
Q  392 gatgaaacttgatgaatgttgtgatt 417  Q
    | ||||| ||| ||||||||||||||    
T  45619798 ggtgaaatttgttgaatgttgtgatt 45619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 421
Target Start/End: Complemental strand, 22331209 - 22331081
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  || |||| |   |||| ||| |||| |||| |||||||| ||  ||||||||    
T  22331209 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataactgataagtcgtgtcataattgaatatgtgacttggt-taattgtgcatt 22331111  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    ||||||| ||| ||||||||||||||||||    
T  22331110 gatgaaatttggtgaatgttgtgattatgt 22331081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 23154460 - 23154562
Alignment:
Q  296 taccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatg 395  Q
    |||||||| ||| |||| |||| |||||||||||||||||||||| ||| ||||| | || ||  |||| |||| ||||||||| |||||||| ||| ||    
T  23154460 taccacatacatatagaagtgtttagaacattgcatgcatttgaatttggtgaaatgcgtcatgcttgattatgtgacttggtgaatatgtgcgttggtg 23154559  T
Q  396 aaa 398  Q
    |||    
T  23154560 aaa 23154562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 23565717 - 23565819
Alignment:
Q  296 taccacatgcatgtagaggtgtctagaacattgcatgcatttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatg 395  Q
    |||||||| ||| |||| |||| |||||||||||||||||||||| ||| ||||| | || ||  |||| |||| ||||||||| |||||||| ||| ||    
T  23565717 taccacatacatatagaagtgtttagaacattgcatgcatttgaatttggtgaaatgcgtcatgcttgattatgtgacttggtgaatatgtgcgttggtg 23565816  T
Q  396 aaa 398  Q
    |||    
T  23565817 aaa 23565819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 18332191 - 18332271
Alignment:
Q  525 ttgaaatccttcaatgcttttacttgattatattt--tatgtggaatattatctatccccaagtagtcgtttggttgatcg 603  Q
    ||||||||||| |||||||||| |||||||| |||  || ||||||||||||||| | || ||| ||||||||||||||||    
T  18332191 ttgaaatccttgaatgcttttatttgattatgtttattaggtggaatattatctaacacctagtggtcgtttggttgatcg 18332271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 28579512 - 28579557
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  28579512 atggtaccacatgcatgtagagatgtgtctagaacattgcatgcat 28579557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 22576582 - 22576453
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttg-aaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    ||||||||||||||| || | | ||||||||||||||||||| |||  | |||||||   |||| ||| |||| |||| |||||| || || ||||||||    
T  22576582 tggtaccacatgcatctaaaagagtctagaacattgcatgcacttgttatttgatgagtcgtgtcatagttgaatatgtgacttgatgaatctgtgcatt 22576483  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| ||| ||||| || |||||||||    
T  22576482 ggtgaaatttggtgaatattatgattatgt 22576453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 43938233 - 43938189
Alignment:
Q  294 ggtaccacatgcatgtagag--gtgtctagaacattgcatgcatt 336  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  43938233 ggtaccacatgcatgtagagtcgtgtctagaacattgcatgcatt 43938189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 18331984 - 18332031
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    |||||||| ||||||||||| |||||||| |||||||||||| |||||    
T  18331984 tggtaccatatgcatgtagaagtgtctaggacattgcatgcacttgaa 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 544
Target Start/End: Original strand, 23154655 - 23154710
Alignment:
Q  489 tattttaggaatattgaatatgtacatgtgtatctattgaaatccttcaatgcttt 544  Q
    |||||||||||| |||||||||||||||||||| |||| ||  || ||||||||||    
T  23154655 tattttaggaatgttgaatatgtacatgtgtatttatttaacaccgtcaatgcttt 23154710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 544
Target Start/End: Original strand, 23565912 - 23565967
Alignment:
Q  489 tattttaggaatattgaatatgtacatgtgtatctattgaaatccttcaatgcttt 544  Q
    |||||||||||| |||||||||||||||||||| |||| ||  || ||||||||||    
T  23565912 tattttaggaatgttgaatatgtacatgtgtatttatttaacaccgtcaatgcttt 23565967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  298 ccacatgcatgtagaggtgtctagaacattgcatgcatt 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 7513680 - 7513725
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  7513680 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 7513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 34135957 - 34136026
Alignment:
Q  352 gtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgtgattatgt 421  Q
    |||| ||| |||| ||||| |||||||| || ||||||||| ||| | ||| ||||||||||||||||||    
T  34135957 gtgtcataattgaatatgccacttggtgaatttgtgcattggtgacatttggtgaatgttgtgattatgt 34136026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 42180027 - 42180072
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  42180027 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 42180072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 600
Target Start/End: Original strand, 13893 - 14010
Alignment:
Q  486 tagtattttaggaatattgaatatgtacatgtgtatctatt-gaaatccttcaatgcttttacttgattatattt--tatgtggaatattatctatcccc 582  Q
    ||||||| ||||||| ||| |||||||||||| ||| |||| ||||||||| ||| |||||| |||||||| |||  | |||||||||||||||| ||||    
T  13893 tagtattctaggaatgttggatatgtacatgtttatttatttgaaatccttgaatacttttatttgattatgtttattgtgtggaatattatctaacccc 13992  T
Q  583 aagtagtcgtttggttga 600  Q
     ||| ||| |||||||||    
T  13993 tagtggtcatttggttga 14010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 421
Target Start/End: Complemental strand, 20262 - 20134
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcatt 391  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||  |||||||||   |||| ||| |||| |||| |||||||| ||  ||||||||    
T  20262 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgattatgtgacttggt-taattgtgcatt 20164  T
Q  392 gatgaaacttgatgaatgttgtgattatgt 421  Q
    | ||||| |||  |||||||||||||||||    
T  20163 ggtgaaatttggcgaatgttgtgattatgt 20134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 11059 - 11105
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttg 338  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  11059 atggtaccacatgcatgtagaagtgtctagaacattgcatgcatttg 11105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 600
Target Start/End: Original strand, 11260 - 11377
Alignment:
Q  486 tagtattttaggaatattgaatatgtacatgtgtatctatt-gaaatccttcaatgcttttacttgattatatt--ttatgtggaatattatctatcccc 582  Q
    |||| |||||||||| ||| ||||||| |||||||| |||| ||||||||| ||| |||||| |||||||| ||  || ||||||||| ||| || ||||    
T  11260 tagtgttttaggaatgttggatatgtatatgtgtatttatttgaaatccttgaatacttttatttgattatgtttattgtgtggaatactatttaacccc 11359  T
Q  583 aagtagtcgtttggttga 600  Q
     |||  ||||||||||||    
T  11360 cagtgatcgtttggttga 11377  T

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Target: scaffold0468 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 12642 - 12745
Alignment:
Q  316 gtctagaacattgcatgcatttgaaa--ttgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgt 413  Q
    |||||||||||||||||||||||||   |||||||   |||||||| |||| |||| |||||| || || ||||||||| ||||| ||| ||||||||||    
T  12642 gtctagaacattgcatgcatttgaatagttgatgagtcgtgtaataattgaatatgtgacttgttgaatttgtgcattggtgaaatttggtgaatgttgt 12741  T
Q  414 gatt 417  Q
    ||||    
T  12742 gatt 12745  T

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Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 15508 - 15634
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcat 390  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||  | |||||||   |||| ||| |||| |||| |||||| || || |||||||    
T  15508 tggtaccacatgcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatgtgacttgttgaatttgtgcat 15607  T
Q  391 tgatgaaacttgatgaatgttgtgatt 417  Q
    || ||||| ||| | |||||| |||||    
T  15608 tggtgaaatttggttaatgttatgatt 15634  T

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Target: scaffold0333 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 1590 - 1689
Alignment:
Q  316 gtctagaacattgcatgca--tttgaaattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgcattgatgaaacttgatgaatgttgt 413  Q
    |||||||||||||||||||  |||  ||||| ||||| |||| ||| ||||||||| ||||||||| || ||| ||||| ||||| ||| ||||||||||    
T  1590 gtctagaacattgcatgcatttttataattggtgaaatgtgtcatacttgactatgtgacttggtgaatttgtacattggtgaaatttggtgaatgttgt 1689  T

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Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 36417 - 36544
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    |||||||| ||||||| |||| | ||||||||||||||||||||||||  | | ||||    |||| ||| |||| |||| |||||| || || ||||||    
T  36417 atggtaccgcatgcatatagaagagtctagaacattgcatgcatttgaatagtcgatgggtcgtgtcataattgaatatgtgacttgttgaatttgtgca 36516  T
Q  390 ttgatgaaacttgatgaatgttgtgatt 417  Q
    ||| ||||| ||| ||||||||||||||    
T  36517 ttggtgaaatttggtgaatgttgtgatt 36544  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 11172 - 11041
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga--aattgatgaaaagtgtaatatttgactatgcgacttggtgtatatgtgca 389  Q
    |||||||| ||||||| | || | ||||||||||||||||||||||||  |||||||||   |||| ||  |||| |||| |||||| || || ||||||    
T  11172 atggtaccgcatgcatcttgaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcatgattgaatatgtgacttgatgaatttgtgca 11073  T
Q  390 ttgatgaaacttgatgaatgttgtgattatgt 421  Q
    ||| || || | | ||||||||||||||||||    
T  11072 ttggtggaattcggtgaatgttgtgattatgt 11041  T

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Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 5896 - 5850
Alignment:
Q  291 tatggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||    
T  5896 tatggtaccacatgcatctagaagggtctagaacattgcatgcattt 5850  T

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Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 23921 - 23963
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  23921 tggtaccacatgcatgtagaggtgtctagaacataacatgcat 23963  T

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Target: scaffold0123 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 33877 - 33757
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcatttga-aattgatgaaa-agtgtaatatttgactatgcgacttggtgtatatgtg 387  Q
    |||||||||||||||| |||||  | |||||||||||||||||||||||| | ||  |||||  |||| ||| ||||||||| || ||||||  ||||||    
T  33877 atggtaccacatgcatctagagaagagtctagaacattgcatgcatttgatatttcgtgaaattgtgttatacttgactatgtgatttggtgattatgtg 33778  T
Q  388 cattgatgaaacttgatgaat 408  Q
    ||||| | ||||||| |||||    
T  33777 cattggtaaaacttggtgaat 33757  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 101106 - 101151
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcattt 337  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  101106 atggtaccacatgcatctagatgagtctagaacattgcatgcattt 101151  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 256037 - 256085
Alignment:
Q  292 atggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    |||||||| ||||||| |||| | |||||||||||||||||||||||||    
T  256037 atggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 256085  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 3283 - 3244
Alignment:
Q  293 tggtaccacatgcatgtagaggtgtctagaacattgcatg 332  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  3283 tggtaccacatgtatctagaggtgtctagaacattgcatg 3244  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 200824 - 200863
Alignment:
Q  295 gtaccacatgcatgtagaggtgtctagaacattgcatgca 334  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  200824 gtaccacatgcatctagaggagtctagaacattgcatgca 200863  T

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Target: scaffold0396 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 164 - 210
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttgaa 340  Q
    |||||| ||||||| |||| | |||||||||||||||||||||||||    
T  164 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 210  T

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Target: scaffold0338 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 483 - 600
Target Start/End: Original strand, 18506 - 18626
Alignment:
Q  483 tgttagtattttaggaatattgaatatgtacatgtgtatctattgaaatccttcaatgcttttacttgattatattttat---gtggaatattatctatc 579  Q
    |||||||||| ||||| || ||| |||||| |||||  |   ||||||||||| |||||| ||   ||||||||||||||   ||||||||||||||| |    
T  18506 tgttagtattctaggagtaatgattatgtatatgtgctttacttgaaatccttgaatgctgttttatgattatattttattatgtggaatattatctaac 18605  T
Q  580 cccaagtagtcgtttggttga 600  Q
    ||  ||| |||||||||||||    
T  18606 cctcagtggtcgtttggttga 18626  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 420979 - 420934
Alignment:
Q  292 atggtaccacatgcatgtagag--gtgtctagaacattgcatgcat 335  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||    
T  420979 atggtaccacatgcatgtagagtcgtgtctagaatattgcatgcat 420934  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 3817 - 3865
Alignment:
Q  293 tggtaccacatgcatgtagag--gtgtctagaacattgcatgcatttga 339  Q
    ||||||||||||||| |||||  | ||||||||||||||||||||||||    
T  3817 tggtaccacatgcatttagagaagagtctagaacattgcatgcatttga 3865  T

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Target: scaffold0138 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 26849 - 26804
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  26849 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 26804  T

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Target: scaffold0138; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 27864 - 27819
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  27864 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 27819  T

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Target: scaffold0138; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 39860 - 39815
Alignment:
Q  294 ggtaccacatgcatgtagaggtgtctagaacattgcatgcatttga 339  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||    
T  39860 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 39815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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