View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17475_high_5 (Length: 295)
Name: NF17475_high_5
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17475_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 46238729 - 46238453
Alignment:
| Q |
6 |
acaagttcacttcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
105 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238729 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
46238630 |
T |
|
| Q |
106 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238629 |
atagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
46238530 |
T |
|
| Q |
206 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcaccttc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238529 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcaccttc |
46238453 |
T |
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Back To:
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Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 3455929 - 3456205
Alignment:
| Q |
6 |
acaagttcacttcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
105 |
Q |
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|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455929 |
acaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
3456028 |
T |
|
| Q |
106 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
205 |
Q |
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||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456029 |
atagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
3456128 |
T |
|
| Q |
206 |
tcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcaccttc |
282 |
Q |
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||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3456129 |
tcgattgcccttcgattgtttcctgcatcttcttcgcaacttcgttcgtcttctctccttctttcggcgtcaccttc |
3456205 |
T |
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