View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17475_low_3 (Length: 375)
Name: NF17475_low_3
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17475_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 35369870 - 35369523
Alignment:
| Q |
15 |
attatactaaagttaacggccaagatgaaaggaaaaatgtcactactatcatcgtttttgaagaaaaaatatgagtgagaaaagaaagcagtgagtgtca |
114 |
Q |
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| T |
35369870 |
attataataaagttaagggccaaggtgaaaggaaaaatgtcactaccatcattgtttttgaagaaaaaatatgagtgagaaaagaaagcagtgagtgtca |
35369771 |
T |
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| Q |
115 |
gttaaagtgccgtctttcaacttcaaaactacaaaaagcaacttctcctacgttgtctcattaccgtttagccattttctaatctttagttttggtttgt |
214 |
Q |
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| T |
35369770 |
gttaaagtgccgtcttccaacttcaaagctacaaaaagcaacttctcctacgttctctcattaccgtttagccattttctagtctttagttttggtttgt |
35369671 |
T |
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| Q |
215 |
caaaaatgatgaaagtccacaaatcataattcaaccggt-aaaaatgtcaaaattgttagatcgaatgtcgtaac--aggattaaatttcaacttcttta |
311 |
Q |
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| T |
35369670 |
caaaaatgatgaaagtccacaaattatagttcaattggtaaaaaaagtcaaaattgttaggtcgaacgtcgtaaccgaggttcaaattccaacttcttta |
35369571 |
T |
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| Q |
312 |
ttttcatgtgtattgagtttccaatggctatttcaatttgtttgtcta |
359 |
Q |
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| T |
35369570 |
tttttatgtgtattgagtttccaatggctatttcaatttgtttgtcta |
35369523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 1216219 - 1216183
Alignment:
| Q |
252 |
gtaaaaatgtcaaaattgttagatcgaatgtcgtaac |
288 |
Q |
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| T |
1216219 |
gtaaaaatgtcaaaattgttagatcgagtgttgtaac |
1216183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 33116437 - 33116393
Alignment:
| Q |
238 |
tcataattcaaccggtaaaaatgtcaaaattgttagatcgaatgt |
282 |
Q |
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| T |
33116437 |
tcataattaaaccgataaaaatatcaaaattattagatcgaatgt |
33116393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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