View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17475_low_4 (Length: 335)
Name: NF17475_low_4
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17475_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 40442266 - 40441950
Alignment:
| Q |
1 |
agttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttagtttctatcatactccgtgtg |
100 |
Q |
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| T |
40442266 |
agttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttagtttctatcatactccgtgtg |
40442167 |
T |
|
| Q |
101 |
cttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442166 |
cttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgttt |
40442067 |
T |
|
| Q |
201 |
caaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccagttagatgactatgcatgacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442066 |
caaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccagttagatgactatgcatgacc |
40441967 |
T |
|
| Q |
301 |
gaccaaggagcaataac |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
40441966 |
gaccaaggagcaataac |
40441950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 18812934 - 18812828
Alignment:
| Q |
126 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaa |
225 |
Q |
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||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaa |
18812835 |
T |
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| Q |
226 |
aggttct |
232 |
Q |
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| ||||| |
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| T |
18812834 |
atgttct |
18812828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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