View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17475_low_5 (Length: 302)
Name: NF17475_low_5
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17475_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 98 - 291
Target Start/End: Complemental strand, 39242772 - 39242573
Alignment:
| Q |
98 |
gcccaaatttagtgtcaaaatctttggttttaattataaaagtacgtatat------atataagaaatgatggggagtgaaagcagtgtgaagcttccac |
191 |
Q |
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| T |
39242772 |
gcccaaatttagtgtcaaagtctttggttttaattataaaagtacgtatatgtatatatataagaaatgatggggagtgaaagcagtgtgaagcttccac |
39242673 |
T |
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| Q |
192 |
ctgggttttacttttctccaacagacgaagaactagtccttcattttctctattccaaggcttctttaccatatcatcctaacatcatacctgaacttca |
291 |
Q |
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| T |
39242672 |
ctgggttttacttttctccaacagacgaagaactagtccttcattttctctattccaaggcttctttaccatatcatcctaacatcatacctgaacttca |
39242573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 39242858 - 39242827
Alignment:
| Q |
17 |
atatataagttgtgatgggaaatcccaagaat |
48 |
Q |
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| T |
39242858 |
atatataagttgtgatgggaaatcccaagaat |
39242827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 44063849 - 44063785
Alignment:
| Q |
182 |
aagcttccacctgggttttacttttctccaacagacgaagaactagtccttcattttctctattc |
246 |
Q |
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| T |
44063849 |
aagcttcctcctggatttgtcttctctccaacagatgaagaacttatccttcattttctctattc |
44063785 |
T |
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