View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17475_low_7 (Length: 242)
Name: NF17475_low_7
Description: NF17475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17475_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 20040061 - 20039849
Alignment:
| Q |
15 |
caaagggtcaacattcattttaaaatatagtcaaaagaggggaacaaaatcannnnnnnnn---caattctgcataatttgtgaacagaacaagatgaaa |
111 |
Q |
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| T |
20040061 |
caaagggtcaacattcattttaaaatatagtcaaaagaggggaacaaaatcaaattttttttttcaattctgcataatttgtgaacggaacaagatgaaa |
20039962 |
T |
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| Q |
112 |
gaaaaaagtagagggaccattgagaaaacacataatagaaatacctcagcaatcgatgtccatgcagaggagatgactggaaaacctataaatttgatgg |
211 |
Q |
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| T |
20039961 |
gaaaaaagtagagcggcaattgagaaaacacataatagaaatacctcagcaatcgatgtccatgcagaggagatgaccggaaaacccataaatttgatgg |
20039862 |
T |
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| Q |
212 |
aatgagttcatat |
224 |
Q |
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| T |
20039861 |
aatgagttcatat |
20039849 |
T |
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Back To:
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 39087180 - 39087133
Alignment:
| Q |
177 |
agaggagatgactggaaaacctataaatttgatggaatgagttcatat |
224 |
Q |
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||||||||| | ||||||||| ||||||||||||||||| |||||||| |
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| T |
39087180 |
agaggagataaatggaaaacccataaatttgatggaatgggttcatat |
39087133 |
T |
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