View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17476_high_1 (Length: 383)
Name: NF17476_high_1
Description: NF17476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17476_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 49 - 331
Target Start/End: Original strand, 1820775 - 1821058
Alignment:
| Q |
49 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
148 |
Q |
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| T |
1820775 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaa |
1820874 |
T |
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| Q |
149 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataata-ttcttaaataagtaaatgattgaacttaatggttaataaact |
247 |
Q |
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| T |
1820875 |
gtaatgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataatatttcttaaataagtaaatgattgaacttaatggttaataaact |
1820974 |
T |
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| Q |
248 |
ctactaaagtatgacttatttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
331 |
Q |
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| T |
1820975 |
ctactaaagtatgacttgtttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
1821058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 1841039 - 1841184
Alignment:
| Q |
49 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
148 |
Q |
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| T |
1841039 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
1841138 |
T |
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| Q |
149 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaatttta |
194 |
Q |
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| T |
1841139 |
gtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
1841184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1840976 - 1841024
Alignment:
| Q |
1 |
caacttgtttcaccagaatttgtgtcttcattgtaattattgattccac |
49 |
Q |
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| T |
1840976 |
caacttgtttcactcgaattcgtgtcttcattgtaattattgtttccac |
1841024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1820721 - 1820753
Alignment:
| Q |
1 |
caacttgtttcaccagaatttgtgtcttcattg |
33 |
Q |
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| T |
1820721 |
caacttgtttcaccagaatttgtgtattcattg |
1820753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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