View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17477_high_1 (Length: 559)
Name: NF17477_high_1
Description: NF17477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17477_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 1726777 - 1726256
Alignment:
| Q |
10 |
ataatactttgcataaaacttgttagataagtcaattt-atggtgcacaagtgaaagagtagtgaaacaaattttgcatcatgcgcaagttagtttttac |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
1726777 |
ataatactttgcgtaaaacttgttagataagtcaattttatgatgcacaagtgaaa-----------caaatcttgcatcatgcgcaaattagtttttag |
1726689 |
T |
|
| Q |
109 |
tattaaatcaataaaacttatcattaaatcaaacatgatgtgactttttgatccaataataaaaacatgttagaaatgatcaaaataactttttattcat |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726688 |
tattgaatcaataaaacttatcattaaatcaaacatgatgtgactttttgatccaataataaaaacatgttagaaatgatcaaaataactttttattcat |
1726589 |
T |
|
| Q |
209 |
tgttggtgaagtaattattacaataaaatttgatcatgtcgttgtacccnnnnnnnnctggatcatatcacaaatagttctaaaagttatcactgaacac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726588 |
tgttggtgaagtaattattacaataaaacttgatcatgtcgttgtacccaaaaaaaactggatcatatcacaaatagttctaaaagttatcactgaacac |
1726489 |
T |
|
| Q |
309 |
aatttcaataacaccaaatacacaaagcaaatacgtaatttagttaccttaagacctcagacaatatagatagcagccaaacataaaaaggtttgtatgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1726488 |
aatttcaataacaccaaatacacaaagcaaatacataatttagttaccttaagacctcagacaat----atagcagccaaacatcaaaaggtttgtatgt |
1726393 |
T |
|
| Q |
409 |
gggatcaatcaatctct----nnnnnnnnnnnnnncacacacacatttgcaacctgaaaagaaaacccagattctctgcagttctgtccagccatactcg |
504 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726392 |
gggatcaatcaatctcttatatatatatacatacacacacacacatttgcaacctgaaaagaaaacccagattctctgcagttctgtccagccatactcg |
1726293 |
T |
|
| Q |
505 |
gcatttggattgatccaatggctaatagcattaatca |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726292 |
gcatttggattgatccaatggctaatagcattaatca |
1726256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 13004719 - 13004779
Alignment:
| Q |
77 |
aaattttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcattaaat |
137 |
Q |
| |
|
|||||||||||||| | |||||| ||||| || |||||||||||||| |||| |||||||| |
|
|
| T |
13004719 |
aaattttgcatcattcacaagtttgttttcaccattaaatcaataaaccttaccattaaat |
13004779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 38406472 - 38406419
Alignment:
| Q |
80 |
ttttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcatt |
133 |
Q |
| |
|
|||||||| || | |||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
38406472 |
ttttgcattatacacaagttcgtttttactattgaatcaataaatcttatcatt |
38406419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 37439849 - 37439781
Alignment:
| Q |
69 |
agtgaaacaaattttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcattaaat |
137 |
Q |
| |
|
||||| ||| ||||| |||||| | |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
37439849 |
agtgacacatatttttcatcatacataagttagtttctactattaaatcaataaattttataattaaat |
37439781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University