View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17477_low_2 (Length: 319)
Name: NF17477_low_2
Description: NF17477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17477_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 102 - 319
Target Start/End: Complemental strand, 24833539 - 24833322
Alignment:
| Q |
102 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccatcttctctatatatagatatggaaaccaagtttacgttgat |
201 |
Q |
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| T |
24833539 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccaccttctctatatatagatatggaaaccaagtttacgctgat |
24833440 |
T |
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| Q |
202 |
gagctagattctctttatggagattcccgagccaaatggttagattatgaggtatacaccttccaatccttctcaatttcaaatttggctcagattaata |
301 |
Q |
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| T |
24833439 |
gagctagactctctttatggagattcccgagccaaatggttaggttatgaggtacacaccttccaatccttctcaatttcaaatttggctcagattaata |
24833340 |
T |
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| Q |
302 |
tatgttgcttaaaataat |
319 |
Q |
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| T |
24833339 |
tatgttgcttaaaataat |
24833322 |
T |
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Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 18187144 - 18186904
Alignment:
| Q |
51 |
ccccatgtaccactctc--tctcttagtccaaatacacacacaactgaacacaatgttttatttggtgttctttattttcattgacaaattattttgctt |
148 |
Q |
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| T |
18187144 |
ccccatgtacccctctcgctctcttcgtccaaa--cacacacaactgaacacaatgttttattttgtgttgtttattttcattgataattcattttgttt |
18187047 |
T |
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| Q |
149 |
agctcggatccatcttctctatatatagatatggaaaccaagtttacgttgatgagctagattctctttatggagattcccgagccaaatggttagatta |
248 |
Q |
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| T |
18187046 |
ggcttgggtccaccttctctatatctagatatggaaaccaagtttatgctgaagagctaaactctctatatggtgaatcccgagccaaagggttaggttc |
18186947 |
T |
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| Q |
249 |
tgaggtatacaccttccaatccttctcaatttcaaatttggct |
291 |
Q |
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| T |
18186946 |
tgaggtacacacctttcaatccttcttaatttcaaattcggct |
18186904 |
T |
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