View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17477_low_3 (Length: 250)
Name: NF17477_low_3
Description: NF17477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17477_low_3 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 25025241 - 25025010
Alignment:
| Q |
6 |
actttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaacttgtttaattaattctttagggttatgtttatgtgtttctgtc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25025241 |
actttggatgaggatttttagattaagaagaaattagggtgtatctatctactaaacttgtttaattaattctttagggttatgtttatgtgtttctgtc |
25025142 |
T |
|
| Q |
106 |
ataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgtataaattctgtttcaaagtttaatgaaattttgttcttcggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
25025141 |
ataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgtataaattttgtttcaaagtttaatgaaattttgttcttctgt |
25025042 |
T |
|
| Q |
206 |
caaaataatttatgttttttctttattttcct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25025041 |
caaaataatttatgttttttctttattttcct |
25025010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 42308020 - 42308115
Alignment:
| Q |
6 |
actttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaacttgtttaattaattctttagggttatgtttatgtgtttc |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| || |||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
42308020 |
actttggatgaggatttttagattatgaagaaattagggtttatctatccactaatctcgtttaattaattttttaggattatgtttaagtgtttc |
42308115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 42314005 - 42314075
Alignment:
| Q |
109 |
atttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgtataaattctgtttcaa |
179 |
Q |
| |
|
|||| |||||| ||||| || || ||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
42314005 |
attttaatggtaaagttcttgtgcctcttagttttattttcttaatgtttcatgtataaatgcagtttcaa |
42314075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 682900 - 683126
Alignment:
| Q |
6 |
actttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaacttgtttaattaattctttagggttatgtttatgtgtttctgtc |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| | |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
682900 |
actttggatgaggatttttagattatgaagaaattagggtttatctatccactaatgtcgtttaattaattttttagggttatgtttatgtgtttttgtt |
682999 |
T |
|
| Q |
106 |
ataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgtataaattctgtttcaaagtttaatgaaattttgttcttcggt |
205 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||| ||||||||| ||||||||||||| | ||||| ||||||||||||||| ||||| || |
|
|
| T |
683000 |
gccattttaatggttaagttcttgtgcctcttggttttattttcttaatg-ttcatgtataaatgcagtttc--agtttaatgaaatttcattcttttgt |
683096 |
T |
|
| Q |
206 |
caaaataatttatgttttttctttattttc |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
683097 |
caaaataatttatgtttattctttattttc |
683126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 23549 - 23611
Alignment:
| Q |
160 |
atgtataaattctgtttcaaagtttaatgaaattttgttcttcggtcaaaataatttatgttt |
222 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||| ||||||| || ||||||||| |||||| |
|
|
| T |
23549 |
atgtataaatgcagtttcaaattttaatgaaatttcgttcttcagttaaaataattgatgttt |
23611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10196537 - 10196475
Alignment:
| Q |
160 |
atgtataaattctgtttcaaagtttaatgaaattttgttcttcggtcaaaataatttatgttt |
222 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||| ||||||| || ||||||||| |||||| |
|
|
| T |
10196537 |
atgtataaatgcagtttcaaattttaatgaaatttcgttcttcagttaaaataattgatgttt |
10196475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University