View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_high_1 (Length: 688)
Name: NF17478_high_1
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 190 - 672
Target Start/End: Original strand, 53678039 - 53678523
Alignment:
| Q |
190 |
agaagtaacatttatgagtcaataaataatttgacacaaaaa-taaatgaat-caataaataatatgtttacacccattcatccatatgagcagtattga |
287 |
Q |
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| T |
53678039 |
agaagtaacatttatgagtcaataaataatttgacaaaaaaaataaatgaattcaataaataatatgtttacacccatccatccatatgagcagtattga |
53678138 |
T |
|
| Q |
288 |
agggacacttcaatatttgcaacgaagttgttattaattttattgatttgacaaaactttatgaagtttaagctataacgacattagtttcataattcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53678139 |
agggacacttcaatatttgcaacgaagttgttattaattttattgatttgacaaaactttatgaagtttaagctataacgacataagtttcataattcat |
53678238 |
T |
|
| Q |
388 |
caactagcttccaaacatgtctacacaagacatgacaacgtaaagccacacctaatgaatggtggagttgagagagcaagggatttcgattagggaactg |
487 |
Q |
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| T |
53678239 |
caactagcttccaaacatgtctacacaagacatgacaacgtaaagccacacctaatgaatggtggagttgagagagcaagggatttggattagggaactg |
53678338 |
T |
|
| Q |
488 |
ccaagacatggataattcatctttccttaaaccccacacaccttaaaaaatttcaacatattccactttatatggtttactgtctcgaaaagaaaaattt |
587 |
Q |
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| T |
53678339 |
ccaagacatggataattcatctttccttaaaccccacacaccttaaaaaatttcaacatattccactttatatggtttactgtctcgaaaagaaaaattt |
53678438 |
T |
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| Q |
588 |
aatatataacgatgccttagttttaagctaaaataaaaagtgagatacagttcaagcttgttaacacatcttcttcatttaaaaa |
672 |
Q |
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| T |
53678439 |
aatatataacgatgccttagttttaagctaaaataaaaagtgagatacagttcaagcttgttaacacatcttcttcatttaaaaa |
53678523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 53677835 - 53678011
Alignment:
| Q |
13 |
aagaatattcaaaatccatttatagcttccagaataagaattgccttatgagcatgtgcaactttcacttaaagatttgttaaattattatgctgatttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53677835 |
aagaatattcaaaatccatttatagcttccagaataagaattgccttatgagcatgtgcaactttcacttaaagatttgttaaattattatgctgatttt |
53677934 |
T |
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| Q |
113 |
tcaattcagagtatatnnnnnnncatgaacatgtgcagccatgaaatgatatagtaggggttgctgctaccaaaaat |
189 |
Q |
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| T |
53677935 |
tcaattcagagtatataaaaaaacatgaacatgtgctgccatgaaatgagatagtaggggttgctgctaccaaaaat |
53678011 |
T |
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