View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_high_11 (Length: 243)
Name: NF17478_high_11
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36607075 - 36607317
Alignment:
| Q |
1 |
aaacaaacaaaactagtataaaacatctggtagacatacgttcttttctagcataactgccataacatggtagggagaatcttcacgttccttccaaaac |
100 |
Q |
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| T |
36607075 |
aaacaaacaaaactagtataaaacatctggtaggcatacgttcttttctagcataactgccataacatggtagggagaatcttcacgttccttccaaaac |
36607174 |
T |
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| Q |
101 |
atagccaggatgtttactttcatttattctggcagtgttttcttttgaaataattaaaggaatgtgaatttttaaaaatcattttcaataaaattacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36607175 |
atagccaggatgtttactttcatttattctggcagtgttttcttttgaaataattaaagaaatgtgaatttttaaaaatcattttcaataaaattacaaa |
36607274 |
T |
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| Q |
201 |
cagatcatacgtaaaaaggaaatatatatatttttcaacggtg |
243 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36607275 |
cagatcatacgtaaaaagaaaatatatatatttttcaacggtg |
36607317 |
T |
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