View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17478_high_4 (Length: 445)

Name: NF17478_high_4
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17478_high_4
NF17478_high_4
[»] chr4 (1 HSPs)
chr4 (1-114)||(13082727-13082840)
[»] chr8 (2 HSPs)
chr8 (399-440)||(7583548-7583589)
chr8 (250-286)||(7583692-7583728)
[»] chr7 (2 HSPs)
chr7 (399-438)||(18204009-18204048)
chr7 (399-440)||(5923626-5923667)
[»] chr5 (1 HSPs)
chr5 (399-440)||(4898594-4898635)
[»] chr1 (1 HSPs)
chr1 (399-440)||(19494582-19494623)
[»] scaffold0242 (2 HSPs)
scaffold0242 (250-286)||(12754-12790)
scaffold0242 (250-286)||(21589-21625)
[»] chr6 (1 HSPs)
chr6 (250-286)||(6336956-6336992)
[»] chr3 (1 HSPs)
chr3 (167-199)||(28956435-28956467)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13082840 - 13082727
Alignment:
Q  1 catgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatcttgactatgtatcttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13082840 catgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatcttgactatgtatcttttt 13082741  T
Q  101 agaatgttttgcag 114  Q
    ||||||||||||||    
T  13082740 agaatgttttgcag 13082727  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 7583589 - 7583548
Alignment:
Q  399 cagtaacctaaacctaacctcctgttgggttgattctctgct 440  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  7583589 cagtaacctaaacctagcctcctgttgggttgattctctgct 7583548  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 7583728 - 7583692
Alignment:
Q  250 gggtatgggcactatactaccaagtcccgcaacccgc 286  Q
    ||||||||||||||||||||| || ||||||||||||    
T  7583728 gggtatgggcactatactacccagccccgcaacccgc 7583692  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 438
Target Start/End: Original strand, 18204009 - 18204048
Alignment:
Q  399 cagtaacctaaacctaacctcctgttgggttgattctctg 438  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  18204009 cagtaacctaaacctagcctcctgttgggttgattctctg 18204048  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 5923626 - 5923667
Alignment:
Q  399 cagtaacctaaacctaacctcctgttgggttgattctctgct 440  Q
    ||||||||||||||||  ||||||||||||||||||| ||||    
T  5923626 cagtaacctaaacctagtctcctgttgggttgattctttgct 5923667  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 4898594 - 4898635
Alignment:
Q  399 cagtaacctaaacctaacctcctgttgggttgattctctgct 440  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  4898594 cagtaacctaatcctagcctcctgttgggttgattctctgct 4898635  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 19494623 - 19494582
Alignment:
Q  399 cagtaacctaaacctaacctcctgttgggttgattctctgct 440  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  19494623 cagtaacctaaacctagcatcctgttgggttgattctctgct 19494582  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 12754 - 12790
Alignment:
Q  250 gggtatgggcactatactaccaagtcccgcaacccgc 286  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  12754 gggtatgggcactgtactacccagtcccgcaacccgc 12790  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 21589 - 21625
Alignment:
Q  250 gggtatgggcactatactaccaagtcccgcaacccgc 286  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  21589 gggtatgggcactgtactacccagtcccgcaacccgc 21625  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 6336956 - 6336992
Alignment:
Q  250 gggtatgggcactatactaccaagtcccgcaacccgc 286  Q
    ||||||||||||||||||||| || ||||||||||||    
T  6336956 gggtatgggcactatactacccagccccgcaacccgc 6336992  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 28956435 - 28956467
Alignment:
Q  167 atgacaattggatccaggcccgatggatacccg 199  Q
    ||||||||||||||||||||||||||| |||||    
T  28956435 atgacaattggatccaggcccgatggacacccg 28956467  T

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