View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_low_11 (Length: 252)
Name: NF17478_low_11
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24156538 - 24156305
Alignment:
| Q |
1 |
aatctataacttgaatctctctgcatcttccaatctcttctggaatagtacctactaaattgttctgccatagaagtaaactcttcagcttgttaaggtt |
100 |
Q |
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| T |
24156538 |
aatctataagttgaatctctctgcatcttccaatctcttctggaatagtacctactaaattgttctgccatagaagtaaactcttcagcttgttaaggtt |
24156439 |
T |
|
| Q |
101 |
tccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaactcactgcaatttccaatctcttgaggaattgatcctgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24156438 |
tccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaactcactgcaatttccaatctcttgaggaattgagcctgac |
24156339 |
T |
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| Q |
201 |
aatagagttgtgtaaatagctatggttttgattc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24156338 |
aatagagttgtgtaaatagctatggttttgattc |
24156305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 42215101 - 42214892
Alignment:
| Q |
17 |
ctctctgcatcttccaatctcttctggaatagtacctactaaattgttctgccatagaagtaaactcttcagcttgttaaggtttccaatttgagctgga |
116 |
Q |
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||||||||| |||||| |||||||||||| | ||||| | |||||| ||||||| ||||| ||||| ||||| | || | |||||||||| |||| |
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| T |
42215101 |
ctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactctgaagctttctgagctcaccaatttgaggtgga |
42215002 |
T |
|
| Q |
117 |
attgaacctgagagagagttctgatacaaataaaggtgctgcaactcactgcaatttccaatctcttgaggaattgatcctgacaatagagttgtgtaaa |
216 |
Q |
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|||||||| || | ||||||||||||||||| || | |||||||||||||||||| || ||||||| || || || |||||||| |||||||||||| |
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| T |
42215001 |
attgaaccagaaattgagttctgatacaaatacagattctgcaactcactgcaattccctatctcttctggtatagagcctgacaactgagttgtgtaaa |
42214902 |
T |
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| Q |
217 |
tagctatggt |
226 |
Q |
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| |||||||| |
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| T |
42214901 |
tggctatggt |
42214892 |
T |
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