View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17478_low_2 (Length: 472)

Name: NF17478_low_2
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17478_low_2
NF17478_low_2
[»] chr5 (3 HSPs)
chr5 (19-421)||(20959699-20960101)
chr5 (422-467)||(21006135-21006180)
chr5 (422-467)||(21011884-21011929)
[»] chr3 (4 HSPs)
chr3 (27-182)||(3180475-3180632)
chr3 (303-411)||(3180258-3180363)
chr3 (243-294)||(3180356-3180407)
chr3 (199-248)||(3180426-3180475)
[»] chr8 (4 HSPs)
chr8 (416-467)||(24750107-24750158)
chr8 (421-467)||(24744388-24744434)
chr8 (422-467)||(43579675-43579720)
chr8 (422-467)||(43583590-43583635)
[»] chr6 (2 HSPs)
chr6 (422-467)||(26452309-26452354)
chr6 (421-467)||(26446499-26446545)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 20959699 - 20960101
Alignment:
Q  19 agagaagctgatagagatttcacctcttatatctccaataggcaacaaaaggacaaattgaaccaaaagcataatagattgcagtaatcaagtggacata 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20959699 agagaagttgatagagatttcacctcttatatctccaataggcaacaaaaggacaaattgaaccaaaagcataatagattgcagtaatcaagtggacata 20959798  T
Q  119 gtgattatatatacaaactcgtttcaaaaggtgttaacaaagagaatgccaaatgagttttgttatgaggttgattcaaatcctgttcttaatttttgca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20959799 gtgattatatatacaaactcgtttcaaaaggtgttaacaaagagaatgccatatgagttttgttatgaggttgattcaaatcctgttcttaatttttgca 20959898  T
Q  219 agattggacaggaaatagcatcaatttctcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtttgtgatttcattggtttctttctc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20959899 agattggacaggaaatagcatcaatttctcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtttgtgatttcattggtttctttctc 20959998  T
Q  319 tagcttagtgttccttaaaggcttgctcgtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttgaaactattatattgttt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  20959999 tagcttagtgttccttaaaggcttgctcgtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttgaaacttttatgttgttt 20960098  T
Q  419 gtt 421  Q
    |||    
T  20960099 gtt 20960101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 21006135 - 21006180
Alignment:
Q  422 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  21006135 ggcttaatacatacgcaggtcccttaacttattttttcttctcact 21006180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 21011929 - 21011884
Alignment:
Q  422 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  21011929 ggcttaatacatacgcaggtcccttaacttattttttcttctcact 21011884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 3180632 - 3180475
Alignment:
Q  27 tgatagagatttcacctcttatatctccaataggcaacaaaaggacaaattgaaccaaaagcataatagattgcagtaatcaagtggac--atagtgatt 124  Q
    ||||||||||||||||| |||| |||||||||||| | |||||| ||| ||||| || ||||||||||||||||||||| | |||||||  ||||||||     
T  3180632 tgatagagatttcaccttttatttctccaataggctaaaaaaggtcaagttgaatcacaagcataatagattgcagtaacccagtggacatatagtgat- 3180534  T
Q  125 atatatacaaactcgtttcaaaa--ggtgttaacaaagagaatgccaaatgagttttgtt 182  Q
     ||||||||||||| || |||||  |||||||| ||||||||||||| ||||||||||||    
T  3180533 -tatatacaaactcattccaaaaagggtgttaataaagagaatgccatatgagttttgtt 3180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 3180363 - 3180258
Alignment:
Q  303 cattggtttctttctctagcttagtgttccttaaaggcttgctcgtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttga 402  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||| |||||||||   |||||| ||||||||||    
T  3180363 cattggttgctttctctagcttagtgttccttgaaggcttgctggtagctttggtttccataactagtttaggttgtaac---ttagtgttgatccttga 3180267  T
Q  403 aactattat 411  Q
    |||| ||||    
T  3180266 aacttttat 3180258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 3180407 - 3180356
Alignment:
Q  243 tttctcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtt 294  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  3180407 tttcttagtatggaggagattctttggcaggtggctgtcttgtgcattggtt 3180356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 3180475 - 3180426
Alignment:
Q  199 tcctgttcttaatttttgcaagattggacaggaaatagcatcaatttctc 248  Q
    ||||||||| | |||| ||||||||||||||||||| |||||||||||||    
T  3180475 tcctgttctcagttttagcaagattggacaggaaatggcatcaatttctc 3180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 24750158 - 24750107
Alignment:
Q  416 tttgttggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24750158 tttgttggcttaatgcatacgcaagtcccttaacttattttttcttctcact 24750107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 24744388 - 24744434
Alignment:
Q  421 tggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  24744388 tggcttaatgcatacggaggtcccttaacttattttttcttctcact 24744434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 43579675 - 43579720
Alignment:
Q  422 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||| |||| ||| ||| ||||||||||||||||||||||||    
T  43579675 ggcttaatacatacgcaagtctcttaacttattttttcttctcact 43579720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 43583635 - 43583590
Alignment:
Q  422 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  43583635 ggcttaatacatacgcatgtcccttaatttattttttcttctcact 43583590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 26452354 - 26452309
Alignment:
Q  422 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26452354 ggcttaatgcatacgcaggtcccttaacttattttttcttctcact 26452309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 26446499 - 26446545
Alignment:
Q  421 tggcttaatgcataagcaggtcccttaacttattttttcttctcact 467  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  26446499 tggcttaatgcatacgcatgtcccttaacttattttttcttctcact 26446545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University