View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_low_3 (Length: 458)
Name: NF17478_low_3
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 36570564 - 36570993
Alignment:
| Q |
12 |
agatgaagagtgggtattttcgttaatgtaaaaatggttaacaaaacaagaacaaagtacaggagaatatggcatacatacactcatactatagaacagt |
111 |
Q |
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| T |
36570564 |
agatgaagagtgggtattttcgttaatgtaaaaatggttaacaaaacaagaacaaagtacaggagaatatggcatacatacactcatactatagaacagt |
36570663 |
T |
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| Q |
112 |
agaggaagtcacttgttcacaaaattcctcaattccttaaatggcatgaatcgcatgaaaagtgttcgtagaatgtttccatccacaggacaaaaattaa |
211 |
Q |
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| T |
36570664 |
agaggaagtcacttgttcacaaaattcctcaattccttaaatggcatgaatcgcatgaaaagtgttcgtagaatgtttccatccacaggacaaaaattaa |
36570763 |
T |
|
| Q |
212 |
acacatacgaataatttaatcatagaaatgcatcgaatccatagcagaggattggagaattttttgtcactgatttcagttacatatcnnnnnnnactct |
311 |
Q |
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| T |
36570764 |
acacatacgaataatttaatcatagaaatgcatcgaatccatagcagagggttggagaattttttgtcactgatttcagttacatatctttttttactct |
36570863 |
T |
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| Q |
312 |
actacgcatttttggtactcataaatgcaaactactaagggatagtaaacaattatttcctatataaggaatggtcattacatgtgacatcaaactacat |
411 |
Q |
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| T |
36570864 |
actacgcatttttggtactcataaatgcaaactactaagggatagtaaacaattatttcctatataaggaatggtcattacatgtgacatcaaactacat |
36570963 |
T |
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| Q |
412 |
gcccaaatattgatgaaacttaagtactcac |
442 |
Q |
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| T |
36570964 |
-cccaaatattgatgaaacttaagaactcac |
36570993 |
T |
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