View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_low_7 (Length: 362)
Name: NF17478_low_7
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 11478344 - 11478674
Alignment:
| Q |
11 |
tgcgcctttgattcgttatagatctgttcgagtattagaagctcatcggttgagaactctaggcctgaaaatagaagtaacacattcttccttctaagtg |
110 |
Q |
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| T |
11478344 |
tgcgcctttgattcgttatagatctgttcgagtattagaagctcgtcggttgagaactctaggcctgaaaatagaagtaacacattcttccttctcagtg |
11478443 |
T |
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| Q |
111 |
cctcaaggctcgcctgtttgtttgcattaatcataacagatttagttaatataatcagcttcttgtattagtatttagaaatgttattggagttagaaaa |
210 |
Q |
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| T |
11478444 |
cctcaaggctcgcctgtttgttt--------cataacaatattaattagtataatcagcttctcgtattagtatttagaaatgttattggagttagaaaa |
11478535 |
T |
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| Q |
211 |
tcaaacccttttctttgaaacaccgtcgtacagaggcaaaatgtcatcatgtgaataaatcaaagccttgatgatcttcatgttgtcagtgtgcggtgtc |
310 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11478536 |
tcaaacccttttctttgaaaccccgtcgtatagaggcaaaatgtcatcatgtgaataaatcaaagccttgatgatcttcatgttgtcagtgtgtggtgtc |
11478635 |
T |
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| Q |
311 |
aaaaataattcccgtagcattccataagcttcagtatcc |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11478636 |
aaaaataattcccgtagcattccataagcttcagtatcc |
11478674 |
T |
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