View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17478_low_8 (Length: 330)
Name: NF17478_low_8
Description: NF17478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17478_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 1971694 - 1971442
Alignment:
| Q |
11 |
caaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgaagat |
110 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1971694 |
caaaagcttccttcataacaccaaagtacgt-gtggttacaccggcatgcgtaaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgatgat |
1971596 |
T |
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| Q |
111 |
atgaatcaaggcgaaagaaggaagcgcgccgataactttgagaattgccggaatttaaatggttccggagccgattatgctgggggcgacattgaatacg |
210 |
Q |
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| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1971595 |
aagaatcaaggcgaaagaaggaagcacgccgagaactttgagaatcgccggaatttaaatgattccggagccgattatgctgggggcgacattgaatacg |
1971496 |
T |
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| Q |
211 |
gcgtcgatcagagacggttgcagcggagacaaaacaaccaaaatggataccgcc |
264 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
1971495 |
gcgtcgatcagagacggttgcagcggagacaaaacgaccaaaattgatgccgcc |
1971442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 32395063 - 32394862
Alignment:
| Q |
11 |
caaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgaagat |
110 |
Q |
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||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | | || |
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| T |
32395063 |
caaaagcttccttcataacaccagagtatgtcgtggttacaccagcatgtgtaaaacgcatgagaaaatcaacagaaacttcggcgagcacggcaacaat |
32394964 |
T |
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| Q |
111 |
atgaatcaaggcgaaagaaggaagcgcgccgataactttgagaattgccggaatttaaatggttccggagccgattatgctgggggcgacattgaatacg |
210 |
Q |
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| ||||||||||||| ||||||||| | |||| |||||||||||| ||||||||| | ||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
32394963 |
aagaatcaaggcgaaggaaggaagcacaccgagaactttgagaatcgccggaattgacatgattccggagccaattatgctggtggcgacattgaatacg |
32394864 |
T |
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| Q |
211 |
gc |
212 |
Q |
| |
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|| |
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| T |
32394863 |
gc |
32394862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 32392968 - 32392913
Alignment:
| Q |
47 |
ttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcagcgagcaca |
102 |
Q |
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||||||| || | ||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
32392968 |
ttacacctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaagcaca |
32392913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 19962677 - 19962540
Alignment:
| Q |
10 |
tcaaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgaaga |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |
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| T |
19962677 |
tcaaaagcttccttcataacaccaaagtacgtcgtggttacacgggcatgtgtaaaacgcatgagaaaatcaacaaaaacttcagcgagtacatcgacga |
19962578 |
T |
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| Q |
110 |
tatgaatcaaggcgaaagaaggaagcgcgccgataact |
147 |
Q |
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|| ||||||||||||||||||||||| |||||| |||| |
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| T |
19962577 |
taagaatcaaggcgaaagaaggaagcacgccgagaact |
19962540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 19962509 - 19962466
Alignment:
| Q |
209 |
cggcgtcgatcagagacggttgcagcggagacaaaacaaccaaa |
252 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
19962509 |
cggcgtcgatcagagacggttgcagtagagacaaaacgaccaaa |
19962466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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