View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_high_3 (Length: 295)
Name: NF17479_high_3
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 965353 - 965065
Alignment:
| Q |
4 |
gagttaattaagaaatatcatcaagaaaaagaaaattgggccaatctagaatttgtgctaagttgtcttacatcaaaccttacaacttgcactatgtggg |
103 |
Q |
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| T |
965353 |
gagttaattaagaaatattatcaagaaaaagaaaattgggccaatccagaatttgttccaagttgtcttacatcaaaccttacaacttgcactatgtggg |
965254 |
T |
|
| Q |
104 |
actttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatgtcaatgtggtgctacac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
965253 |
actttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatgtcaatgtggtgctacac |
965154 |
T |
|
| Q |
204 |
gaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaacactccatgtattgcttgtagt |
292 |
Q |
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| T |
965153 |
gaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaactctcaatgtattgcttgtagt |
965065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 973895 - 973736
Alignment:
| Q |
27 |
agaaaaagaaaattgggccaatctagaatttgtgctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaa |
126 |
Q |
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| T |
973895 |
agaaaaagaaaattgggccaatccaaaatttgttccaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaa |
973796 |
T |
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| Q |
127 |
cgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatg |
186 |
Q |
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| T |
973795 |
cgtaatcacattatgttagcaagatttattctggagaacgcaagagttttacaaactatg |
973736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 1400013 - 1400149
Alignment:
| Q |
63 |
aagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggag |
162 |
Q |
| |
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|||||||||| ||| ||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||| || |
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| T |
1400013 |
aagttgtctttcattaaaccttacaacttgcaatatgcgggactttg---atgaaggccaacaacgtaatcgcattatgttagcaaggtttattctgcag |
1400109 |
T |
|
| Q |
163 |
aatgcaagagttttagaaactatgtcaatgtggtgctaca |
202 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||| |
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| T |
1400110 |
aatgcaagagttttagaaactatgccaatctggtgctaca |
1400149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 821346 - 821459
Alignment:
| Q |
78 |
aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta |
177 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| ||||||||| |
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| T |
821346 |
aaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagtttta |
821445 |
T |
|
| Q |
178 |
gaaactatgtcaat |
191 |
Q |
| |
|
||||||||| |||| |
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|
| T |
821446 |
gaaactatgacaat |
821459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 1403731 - 1403870
Alignment:
| Q |
63 |
aagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggag |
162 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||| |||| ||||||||| || || |||||| ||||||| ||||||| ||||||| ||||||||||| |
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| T |
1403731 |
aagttgcctttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattctggat |
1403830 |
T |
|
| Q |
163 |
aatgcaagagttttagaaactatgtcaatgtggtgctaca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
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| T |
1403831 |
aatgcaagagttttagaaactatgtcaatctggtgctaca |
1403870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 957929 - 957801
Alignment:
| Q |
63 |
aagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggag |
162 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| ||||| |||||||||| || |
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| T |
957929 |
aagttgcctttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaag |
957830 |
T |
|
| Q |
163 |
aatgcaagagttttagaaactatgtcaat |
191 |
Q |
| |
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||||| ||||||||||||||| ||||||| |
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| T |
957829 |
aatgcgagagttttagaaactttgtcaat |
957801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 410490 - 410677
Alignment:
| Q |
78 |
aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta |
177 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |||||||| ||||| | |||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
410490 |
aaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta |
410589 |
T |
|
| Q |
178 |
gaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaac |
271 |
Q |
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||||||| | || | |||| ||| |||| |||||||| |||||||| ||||||| ||||||| ||||||||| || ||||||||| |
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| T |
410590 |
cgaactatgactatcttgtgcaacaagaaacagtctaaag------tagaaagactattatcctcatgtccaagggcttctacaacatgtcaac |
410677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 65 - 267
Target Start/End: Complemental strand, 10116596 - 10116400
Alignment:
| Q |
65 |
gttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaa |
164 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| |||| |||| || | |||||| ||| || |||||||||||||||| || |||||||| ||||| |
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|
| T |
10116596 |
gttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaa |
10116497 |
T |
|
| Q |
165 |
tgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagca |
264 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| | | |||| |||||| || |||||||||| ||||| ||||||| |||||||||||| || |
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|
| T |
10116496 |
tgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtcta------aaatagaaagagtgttatcctcatgtccaagggcttcttcaaca |
10116403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 45810362 - 45810196
Alignment:
| Q |
32 |
aagaaaattgggccaatctagaatttgtgctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaa |
131 |
Q |
| |
|
||||||| |||||| ||| | ||| ||| | || ||| ||| ||| |||||| || |||||||||||| |||||||||||| ||||||| ||||||||| |
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|
| T |
45810362 |
aagaaaactgggcctatccaaaatctgttccaacttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaa |
45810263 |
T |
|
| Q |
132 |
tcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatgtcaatgtggtgc |
198 |
Q |
| |
|
||| ||||| ||||||| ||||||||| ||||||||| |||||||||||||||| |||| |||||| |
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|
| T |
45810262 |
tcatgttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgc |
45810196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 12105507 - 12105641
Alignment:
| Q |
65 |
gttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaa |
164 |
Q |
| |
|
|||| ||| |||||||||||| |||||| || || | ||||||||| || ||||| ||| || ||||||||||| |||||| |||||||||| |||| |
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|
| T |
12105507 |
gttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaa |
12105606 |
T |
|
| Q |
165 |
tgcaagagttttagaaactatgtcaatgtggtgct |
199 |
Q |
| |
|
| ||| ||||||||||| ||||||||| ||||||| |
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|
| T |
12105607 |
ttcaacagttttagaaaatatgtcaatctggtgct |
12105641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 28449608 - 28449511
Alignment:
| Q |
82 |
cttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaa |
181 |
Q |
| |
|
||||||||||||||||| |||||||||||| || || || |||| ||| |||||||||||||||||| |||||| | ||||||||||||||| ||| |
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|
| T |
28449608 |
cttacaacttgcactattcgggactttgcatttgtagacctacaa---aatgacattatgctagcaagatatattcttaataatgcaagagttttacaaa |
28449512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 1445861 - 1445743
Alignment:
| Q |
81 |
ccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaa |
180 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||| || |||||| | |||| | | |||| |||| |||||| || ||||||| | ||| || |||||||||| |
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|
| T |
1445861 |
ccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcagttttagaa |
1445762 |
T |
|
| Q |
181 |
actatgtcaatgtggtgct |
199 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
1445761 |
actatgtcaatttggtgct |
1445743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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