View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17479_high_5 (Length: 265)

Name: NF17479_high_5
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17479_high_5
NF17479_high_5
[»] chr2 (11 HSPs)
chr2 (137-250)||(965457-965570)
chr2 (150-250)||(974016-974116)
chr2 (140-230)||(410235-410325)
chr2 (1-82)||(965321-965402)
chr2 (154-246)||(982089-982181)
chr2 (140-246)||(821113-821219)
chr2 (173-246)||(1399522-1399595)
chr2 (154-246)||(1403227-1403319)
chr2 (163-233)||(989773-989843)
chr2 (161-212)||(824884-824935)
chr2 (162-215)||(963576-963629)
[»] chr6 (1 HSPs)
chr6 (143-238)||(10116745-10116840)
[»] chr3 (2 HSPs)
chr3 (140-242)||(45810481-45810583)
chr3 (160-216)||(49426733-49426789)
[»] chr7 (5 HSPs)
chr7 (140-198)||(12105286-12105344)
chr7 (140-212)||(1459318-1459390)
chr7 (140-202)||(1446005-1446067)
chr7 (162-204)||(1333502-1333544)
chr7 (162-214)||(32246902-32246954)
[»] chr1 (1 HSPs)
chr1 (162-216)||(48675483-48675537)
[»] chr5 (1 HSPs)
chr5 (162-215)||(36199111-36199164)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 965457 - 965570
Alignment:
Q  137 tcgaatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  965457 tcgaatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcat 965556  T
Q  237 agttgagcactaac 250  Q
    ||||||||| ||||    
T  965557 agttgagcaataac 965570  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 974016 - 974116
Alignment:
Q  150 ttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaa 249  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaa 974115  T
Q  250 c 250  Q
    |    
T  974116 c 974116  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 410325 - 410235
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatccc 230  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  410325 aatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgtacaactatatccc 410235  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 965321 - 965402
Alignment:
Q  1 ttctttttcttgataatattttttatttaactcagattcatacacccaatcgtcgtcatctcgtaccttatgttaataatat 82  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  965321 ttctttttcttgataatatttcttaattaactcggattcatacacccaatcgtcgtcatctcgtaccttatgttaataatat 965402  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 982089 - 982181
Alignment:
Q  154 atttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  982089 atttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtacaactatattccaatcatagttgagcac 982181  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 821219 - 821113
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagt 239  Q
    |||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||| |||||||||||    
T  821219 aataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagcacccatacaactatattccaatcatagt 821120  T
Q  240 tgagcac 246  Q
    || ||||    
T  821119 tgtgcac 821113  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 1399595 - 1399522
Alignment:
Q  173 taaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 246  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||   ||||||||||||    
T  1399595 taaaattcaagattttgaagcttagggcaatggtggagcacttgtacaattatatcacagctatagttgagcac 1399522  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 1403319 - 1403227
Alignment:
Q  154 atttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 246  Q
    |||||| | ||| |||| |||||  |||||||||||||||||||||||||| | ||||||||| |||| |||||| || | ||||||||||||    
T  1403319 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcac 1403227  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 989773 - 989843
Alignment:
Q  163 acaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaat 233  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||||||| || || | ||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcacttgtactaccaaatcccaat 989843  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 824935 - 824884
Alignment:
Q  161 aaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagca 212  Q
    ||||||||| |||||||||||||||| |||||||||||| | || |||||||    
T  824935 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 824884  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 963629 - 963576
Alignment:
Q  162 aacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcactt 215  Q
    |||||||||||||||| || ||||||||||| |||||||| || | ||||||||    
T  963629 aacaaacctgataaagctcgagattttgaagtttagggcagtggtagagcactt 963576  T

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Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 10116745 - 10116840
Alignment:
Q  143 atgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  10116745 atgattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgtacaactatatcccaatcatag 10116840  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 45810481 - 45810583
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagt 239  Q
    |||||||| |||||||||||||| |||||||||||||| || ||| ||||||||||||| ||||| || |||||||| ||||||||||||||||||||||    
T  45810481 aatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttaggacaatgctgaagcacttgtacaactatatcccaatcatagt 45810580  T
Q  240 tga 242  Q
    |||    
T  45810581 tga 45810583  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 49426733 - 49426789
Alignment:
Q  160 caaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttg 216  Q
    |||||||||||||   ||||||| ||||||||| ||||||||||||| |||||||||    
T  49426733 caaacaaacctgactgagttcaatattttgaaggttagggcaatgattgagcacttg 49426789  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 12105344 - 12105286
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagg 198  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  12105344 aatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttagg 12105286  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 1459318 - 1459390
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagca 212  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||  |||||||    
T  1459318 aatataattgttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggcaatcgtggagca 1459390  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 1446005 - 1446067
Alignment:
Q  140 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaa 202  Q
    |||| |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||    
T  1446005 aatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaa 1446067  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 1333502 - 1333544
Alignment:
Q  162 aacaaacctgataaagttcaagattttgaagcttagggcaatg 204  Q
    |||||||||||| |||||||||  |||||||||||||||||||    
T  1333502 aacaaacctgatcaagttcaagcctttgaagcttagggcaatg 1333544  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 32246954 - 32246902
Alignment:
Q  162 aacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcact 214  Q
    ||||||||| ||||||||  |||||||||||| ||||||| || |||||||||    
T  32246954 aacaaaccttataaagtttgagattttgaagcatagggcagtgttggagcact 32246902  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 48675483 - 48675537
Alignment:
Q  162 aacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttg 216  Q
    |||||||||||||||| || ||||||||||| |||||||| || |||||| ||||    
T  48675483 aacaaacctgataaagctcgagattttgaagtttagggcagtggtggagcgcttg 48675537  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 36199164 - 36199111
Alignment:
Q  162 aacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcactt 215  Q
    |||||||||| |||||||||||| ||||||| |||||||| || || |||||||    
T  36199164 aacaaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagcactt 36199111  T

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