View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17479_high_6 (Length: 220)

Name: NF17479_high_6
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17479_high_6
NF17479_high_6
[»] chr6 (19 HSPs)
chr6 (5-220)||(26627957-26628172)
chr6 (5-220)||(26733934-26734149)
chr6 (1-220)||(27702324-27702543)
chr6 (52-220)||(27714091-27714259)
chr6 (1-220)||(26853562-26853779)
chr6 (7-218)||(26828312-26828524)
chr6 (60-212)||(26966104-26966256)
chr6 (1-219)||(26890006-26890224)
chr6 (7-122)||(27652343-27652458)
chr6 (60-220)||(26651110-26651270)
chr6 (60-220)||(26757078-26757238)
chr6 (60-176)||(27422522-27422638)
chr6 (1-141)||(31291317-31291457)
chr6 (7-141)||(26640621-26640755)
chr6 (7-141)||(26746587-26746721)
chr6 (60-220)||(26631460-26631620)
chr6 (60-220)||(26737435-26737595)
chr6 (151-220)||(31289407-31289476)
chr6 (131-220)||(27652227-27652316)
[»] scaffold0349 (1 HSPs)
scaffold0349 (52-220)||(17685-17853)
[»] chr8 (1 HSPs)
chr8 (52-220)||(29269984-29270152)
[»] scaffold0003 (1 HSPs)
scaffold0003 (60-176)||(64725-64841)
[»] chr4 (4 HSPs)
chr4 (45-85)||(18692521-18692561)
chr4 (45-85)||(18719020-18719060)
chr4 (45-85)||(18674450-18674490)
chr4 (96-220)||(5083123-5083247)
[»] chr1 (1 HSPs)
chr1 (93-172)||(26141211-26141290)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 26627957 - 26628172
Alignment:
Q  5 agttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgac 104  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26627957 agttgaacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgac 26628056  T
Q  105 tgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26628057 tgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 26628156  T
Q  205 aagggcagtgagtaat 220  Q
    | ||| ||||||||||    
T  26628157 atgggaagtgagtaat 26628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 26733934 - 26734149
Alignment:
Q  5 agttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgac 104  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26733934 agttgaacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgac 26734033  T
Q  105 tgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734034 tgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 26734133  T
Q  205 aagggcagtgagtaat 220  Q
    | ||| ||||||||||    
T  26734134 atgggaagtgagtaat 26734149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27702543 - 27702324
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  27702543 ataaagttgaacatggagaatccattcccgatgatttcagcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttt 27702444  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||||||||||||||||||||| |||| ||||||||||||| | ||||| ||||||| | | ||||||||||||||| ||  ||| |||||||||| |||    
T  27702443 tgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgt 27702344  T
Q  201 tcgaaagggcagtgagtaat 220  Q
    |||||||| |||||||||||    
T  27702343 tcgaaaggacagtgagtaat 27702324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 27714259 - 27714091
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  27714259 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 27714160  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||| ||   || |||||||||| ||||||||||||||| |||||||    
T  27714159 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaat 27714091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26853562 - 26853779
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||||||||| |||||||||| |||||| | |||| |||||||||| ||||| |||||  |||||||||||||||||||||||| | || |||||||||    
T  26853562 ataaagttgaaaatggagaatccattcccaacgatttcagcctgttgacggtagtttacataacttttctctaaccaaaactaag-aattacttgttctt 26853660  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||| || |||||||| | | |||  | | ||||||||||| | ||||| ||||| |||||| ||||| ||||||   ||| |||||||| |||||||||    
T  26853661 tgaccgtgcattgtca-gtatccatctgtggtcatctggctatttgcattgtcattcaagatatctaggggttgcgcacaccacaaaatctgttggctgt 26853759  T
Q  201 tcgaaagggcagtgagtaat 220  Q
    ||||||||||||||||||||    
T  26853760 tcgaaagggcagtgagtaat 26853779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 26828312 - 26828524
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgca-gcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgact 105  Q
    ||||||||||| |||| ||||||| ||||| || ||| |||||| |||||||||  |||||||||||| ||||||||||| | ||||||||| |||||||    
T  26828312 ttgaacatggaaaatccattcccgttgatttcaagccagttgtcagtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgact 26828411  T
Q  106 gtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaa 205  Q
    ||||||||||||||  |||  | |||| |||||||| |  |||| |||||||  ||||||||| ||||||| | || |||||||||||| | || |||||    
T  26828412 gtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaa 26828511  T
Q  206 agggcagtgagta 218  Q
    |||||| ||||||    
T  26828512 agggcaatgagta 26828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 26966104 - 26966256
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||| |||||||||||||   || |||||||||||||||||||||||||||| ||||  | ||||||||||||| | ||||  ||||||| |    
T  26966104 gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcga 26966203  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcag 212  Q
     |||||||||| |||||||||| ||| |||||||||| |||||||||||||||    
T  26966204 catgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcag 26966256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 26890006 - 26890224
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||| || |||||| |||||| | | ||||||| | ||||||||||| ||| |||| | ||||||||||||||||||||||||  | ||  || || ||    
T  26890006 ataaaattaaacatgaagaatcaagtgccgatgaattcagcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttattttttatt 26890105  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||||||||||||||||||||| |  | ||||||||||||| | |  |  ||||||  |||||||||||||||| | |||| ||| ||||||| || |||    
T  26890106 tgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgtcggttgt 26890205  T
Q  201 tcgaaagggcagtgagtaa 219  Q
    || ||||||||||||||||    
T  26890206 tctaaagggcagtgagtaa 26890224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 27652458 - 27652343
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| |||||||  ||||| | |||| |||||||||| ||||||| ||||||||||||||||||||||||||||| | || ||||||| ||||||     
T  27652458 ttgaacatagagaatcctttcccaacgatttcagcctgttgccggtaatatacgcaacttttctctaaccaaaactaagcatttacttgttcattgactt 27652359  T
Q  107 tacattgtcaggaaac 122  Q
    ||||||||||||||||    
T  27652358 tacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26651110 - 26651270
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||| |||||| |||||||||||| | | |  ||||||||||| |||||||||||||||||||||  | |||||| ||| || | ||||| ||||||| |    
T  26651110 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26651209  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
     |||||||||| || || |||| ||| |||| ||||| |||||||||||||||||||||||    
T  26651210 tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaat 26651270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26757078 - 26757238
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||| |||||| |||||||||||| | | |  ||||||||||| |||||||||||||||||||||  | |||||| ||| || | ||||| ||||||| |    
T  26757078 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26757177  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
     |||||||||| || || |||| ||| |||| ||||| |||||||||||||||||||||||    
T  26757178 tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaat 26757238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 27422638 - 27422522
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||| ||||||| |    
T  27422638 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 27422539  T
Q  160 gatgtctagaggttgct 176  Q
     |||||||||| |||||    
T  27422538 catgtctagagattgct 27422522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31291317 - 31291457
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||| ||||||||| |||||  ||||  ||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  31291317 ataaaattgaacatgaagaatgcattcttgatgaattcagcctgtagtcggtaatttacgcaacttttctctaacaaaaactaagtattttcttgttctt 31291416  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggct 141  Q
     || |||  |||| ||||||||||  | || ||||||||||    
T  31291417 cgattgtgaattgccaggaaaccatctgtaatcatctggct 31291457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 26640621 - 26640755
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| ||||||| |||||||   ||| |||| |||||||| ||||||||| | |||||||||| ||||||||||| | || || ||||||||||||    
T  26640621 ttgaacatagagaatccattcccgtcaatttcagcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactg 26640720  T
Q  107 tacattgtcaggaaaccacatttagtcatctggct 141  Q
    ||||||||||||||||||  | |||| ||||||||    
T  26640721 tacattgtcaggaaaccatctgtagtgatctggct 26640755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 26746587 - 26746721
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| ||||||| |||||||   ||| |||| |||||||| ||||||||| | |||||||||| ||||||||||| | || || ||||||||||||    
T  26746587 ttgaacatagagaatccattcccgtcaatttcagcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactg 26746686  T
Q  107 tacattgtcaggaaaccacatttagtcatctggct 141  Q
    ||||||||||||||||||  | |||| ||||||||    
T  26746687 tacattgtcaggaaaccatctgtagtgatctggct 26746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26631460 - 26631620
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||||||||| ||| | || |||| |||| || |||||||| ||||||| |||  | ||||||||||||    ||||| ||| | |||    
T  26631460 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa 26631558  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggc-tgttcgaaagggcagtgagtaat 220  Q
     |||||||||||||||| |||  ||| ||||||||  | ||||| |||||||||||||||||    
T  26631559 catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaat 26631620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26737435 - 26737595
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||||||||| ||| | || |||| |||| || |||||||| ||||||| |||  | ||||||||||||    ||||| ||| | |||    
T  26737435 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa 26737533  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggc-tgttcgaaagggcagtgagtaat 220  Q
     |||||||||||||||| |||  ||| ||||||||  | ||||| |||||||||||||||||    
T  26737534 catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaat 26737595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 31289407 - 31289476
Alignment:
Q  151 gtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    ||||||| | |||||||| ||||||| |||  ||| |||||||||| |||||||||||||||||||||||    
T  31289407 gtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaat 31289476  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 27652316 - 27652227
Alignment:
Q  131 gtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    ||||||||||| | ||||| ||||||  | |||||||||  ||||| |||| ||||||||| |||| ||||| |||||||||||| ||||    
T  27652316 gtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaagggcagtgactaat 27652227  T

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Target: scaffold0349 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 17685 - 17853
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  17685 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 17784  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||| ||   || |||||||||| ||||||||||||||| |||||||    
T  17785 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaat 17853  T

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Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 29270152 - 29269984
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  29270152 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 29270053  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||  ||  ||| |||||||| | |||||||||||||||||||||||    
T  29270052 tcatgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaat 29269984  T

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Target: scaffold0003 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 64725 - 64841
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||| ||||||| |    
T  64725 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 64824  T
Q  160 gatgtctagaggttgct 176  Q
     |||||||||| |||||    
T  64825 catgtctagagattgct 64841  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18692561 - 18692521
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18692561 ttgtcggtaatttacacaacttttctctaaccaaaactaag 18692521  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18719060 - 18719020
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18719060 ttgtcggtaatttacacaacttttctctaaccaaaactaag 18719020  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18674490 - 18674450
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  18674490 ttgttggtaatttacacaacttttctctaaccaaaactaag 18674450  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 5083123 - 5083247
Alignment:
Q  96 ttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttg 195  Q
    |||||| ||||||||||| ||| ||||||  | ||||  ||||||| | ||||| ||||| | |||||||||||||| |||    | ||| ||||||| |    
T  5083123 ttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatacgagatgtctagaggtggctcaatccacagaatccgtgg 5083222  T
Q  196 gctgttcgaaagggcagtgagtaat 220  Q
      |||| ||||||||||||||||||    
T  5083223 attgtttgaaagggcagtgagtaat 5083247  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 26141211 - 26141290
Alignment:
Q  93 ttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggt 172  Q
    ||||||||||| ||||||||||||| ||||||  | ||||  ||||||| | ||||| ||||| | ||||||||||||||    
T  26141211 ttgttctttgaatgtacattgtcagaaaaccatctatagttgtctggctatttgcattgtcattctagatgtctagaggt 26141290  T

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