View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_high_9 (Length: 208)
Name: NF17479_high_9
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_high_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40519907 - 40520114
Alignment:
| Q |
1 |
ttcattgtataatttcatcattttgttggagctgaattgctgacatggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataa |
100 |
Q |
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| T |
40519907 |
ttcattgtataatttcatcattttgttggagctgaattgctgacatggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataa |
40520006 |
T |
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| Q |
101 |
atatctgaaagcactgctccataagctgtttctagtgaatttatctgaaaatatgtgttatacaaaatgtaaactaaaattttgattctaataaattaat |
200 |
Q |
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| T |
40520007 |
atatctgaaagcactgctccataagctgtttctagtgaatttatctgaaaatatgtgttatacaaaatgtaaactaaaattttgattctaataaattaat |
40520106 |
T |
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| Q |
201 |
ttcacatt |
208 |
Q |
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|||||||| |
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| T |
40520107 |
ttcacatt |
40520114 |
T |
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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 40510914 - 40511061
Alignment:
| Q |
2 |
tcattgtataatttcatcattttgttggagctgaattgctgacatggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataaa |
101 |
Q |
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| T |
40510914 |
tcattgtataatttcatcattttgttggagcagaattgctggaatggaagcttcataatacaactatgtggcatccctttaactcccatgttgtcataca |
40511013 |
T |
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| Q |
102 |
tatctgaaagcactgctccataagctgtttctagtgaatttatctgaa |
149 |
Q |
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| T |
40511014 |
tatctgaaagcactccttcataacctgtttctagtgaatttatctgaa |
40511061 |
T |
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