View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_low_1 (Length: 481)
Name: NF17479_low_1
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 25749522 - 25749058
Alignment:
| Q |
1 |
atcagttttgtgttgaattagataaattatgagagaattcaattgaattttcaggctggtccctatgaatgggtcacatatgaagaggcttatgatgctg |
100 |
Q |
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| T |
25749522 |
atcagttttgtgttgaattagataaattatgagagaattcaattgaattttcaggctggtacctatgaatgggtcacatatgaagaggcttatgatgctg |
25749423 |
T |
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| Q |
101 |
ccgtccgaattggttccgccatgaggagccgtggtgtcattcctgtaactgttcttcctctattaacagactatactatgtattataaaatttatgtagt |
200 |
Q |
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| T |
25749422 |
ccgtccgaattggttccgccatgaggagccgtggtgtcaatcctgtaactgttcttcctatatttacagactatactatgtattataaaatttatgtagt |
25749323 |
T |
|
| Q |
201 |
taatctaactagtgtttcttgtatcacaagggtgaccgttgtggcatatatggatccaattgtcctgaatggataattgcaatggaggtatgtcacttta |
300 |
Q |
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| T |
25749322 |
taatctaactggtgtttcttgtatcacaagggtgaccgttgtggcatatatggatccaattgtcctgaatggataattgcaatggaggtatgtcacttta |
25749223 |
T |
|
| Q |
301 |
tctttgtagggaaaattacaattaagcaactgtttagtatgttaaacatgttataatatgatatgatttgctttgttaagtatggcaattgtactttgct |
400 |
Q |
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| T |
25749222 |
tctttgtagggaaaattacaattaagcaactgtttagtatgttaaacatgttataatatgatatgatttgccttattaagtattgcaatagcactttgct |
25749123 |
T |
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| Q |
401 |
gaatcattgaaatttggtgtttgcaggcttgtaacagctatgcagtaacatatgccccattatat |
465 |
Q |
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| T |
25749122 |
gaatcattgaaatttggtgtttgcaggcttgtaacagctatgcagtaacatatgccccattatat |
25749058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 12519376 - 12519325
Alignment:
| Q |
240 |
tgtggcatatatggatccaattgtcctgaatggataattgcaatggaggtat |
291 |
Q |
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| T |
12519376 |
tgtggcatatatggttccaactgtcctgaatggatcattgcaatggaggtat |
12519325 |
T |
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