View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_low_10 (Length: 212)
Name: NF17479_low_10
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 34516942 - 34517138
Alignment:
| Q |
1 |
agataaatgaaaatttgaaaaggcagaataactatggtaagttgctaacaccatcagctgcataattttccttaccacatggagcaatttttatttaatg |
100 |
Q |
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| T |
34516942 |
agataaatgaaaatttgaaaaggcagaataactatggtaagttgctaacaccattagctgcataattttccttaccacatggagcaatttttatttaatg |
34517041 |
T |
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| Q |
101 |
aagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatatttgcaaatactgcaaaggaaaaaatgtttaatttttaat |
197 |
Q |
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| T |
34517042 |
aagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatatttgcaaatactgcaaaggaaaaaatgtttaatttttaat |
34517138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 27616575 - 27616703
Alignment:
| Q |
32 |
ctatggtaagttgctaacaccatcagctgcataattttccttaccacatggagcaatttttatttaatgaagagaacaatgatattaaattcagatagac |
131 |
Q |
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| T |
27616575 |
ctatggtaagttgctaacaccatcagctgcataattttccttaccacatgaagcagttttaatttaatgaagagaacaatgatattaaattcagatagac |
27616674 |
T |
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| Q |
132 |
taattcacttataagtttagtttatattt |
160 |
Q |
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| T |
27616675 |
taattcacttatgagtttagtttatattt |
27616703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 34526163 - 34526260
Alignment:
| Q |
63 |
taattttccttaccacatggagcaatttttatttaatgaagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatattt |
160 |
Q |
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| T |
34526163 |
taattttccttaccacatgaagcagtttttatttaatgaagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatattt |
34526260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 34505441 - 34505537
Alignment:
| Q |
38 |
taagttgctaacaccatcagctgcataattttccttaccacatggagcaatttttatttaatgaagagaacaatgatattaaattcagatagactaat |
135 |
Q |
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| T |
34505441 |
taagttgctaacaccatcagctgcataattttccttaccacatgaagcagttttaatttaatgaagagaacaatgata-taaattcagatagactaat |
34505537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 34526283 - 34526323
Alignment:
| Q |
157 |
atttgcaaatactgcaaaggaaaaaatgtttaatttttaat |
197 |
Q |
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| T |
34526283 |
atttgcaaatactgcaacggaaaaaatgtttaatttttaat |
34526323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 34372905 - 34372836
Alignment:
| Q |
46 |
taacaccatcagctgcataattttccttaccacatggagca--atttttatttaatgaagagaacaatga |
113 |
Q |
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| T |
34372905 |
taacaccatcaggtgcataattttccataccacaagaagcaatatttttattaaatgtagagaacaatga |
34372836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 27616726 - 27616766
Alignment:
| Q |
157 |
atttgcaaatactgcaaaggaaaaaatgtttaatttttaat |
197 |
Q |
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|||||| || |||||||||||||||||||| |||||||||| |
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| T |
27616726 |
atttgcgaagactgcaaaggaaaaaatgttaaatttttaat |
27616766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 34486678 - 34486726
Alignment:
| Q |
33 |
tatggtaagttgctaacaccatcagctgcataattttccttaccacatg |
81 |
Q |
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|||||||||||| | ||||||| |||| ||||||||||| ||||||||| |
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| T |
34486678 |
tatggtaagttggtgacaccatgagctacataattttccataccacatg |
34486726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 10533236 - 10533324
Alignment:
| Q |
46 |
taacaccatcagctgcataattttccttaccacatggagcaat--ttttatttaatgaagaga-acaatgatattaaattcagatagac |
131 |
Q |
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|||| ||||||| ||| ||||||||| ||||||| | |||||| ||||||| |||| |||| ||||||||||||| ||||||||||| |
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| T |
10533236 |
taacgccatcaggtgcctaattttccataccacaagaagcaatatttttattaaatgcagagttacaatgatattaacttcagatagac |
10533324 |
T |
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