View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_low_2 (Length: 357)
Name: NF17479_low_2
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 1109567 - 1109901
Alignment:
| Q |
10 |
tcatcaaacctttcatagtaataatgcttaaataagtttgtaaatccctcaacnnnnnnnnngtttgtaaacataatttttcattgtaacgatgttccat |
109 |
Q |
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| T |
1109567 |
tcataaaacctttcatagtaataatgcttaaataagtttgtaaatccctacaaaaaaaaaagtttagtaaacataatttttcattgtaatgatgttccat |
1109666 |
T |
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| Q |
110 |
ccataatatataaccaa--gatacatcgtcaagacaattcataaaaaacacatcaccaaaatacatcacaaagacaagtgatccaaaatacatcatctaa |
207 |
Q |
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| T |
1109667 |
ccataatatataaccaaaagatacatcgtcaagacaattcataaaaaacacatcacaaaaatacatcacaaagacaagtgatccaaaatacatcatctaa |
1109766 |
T |
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| Q |
208 |
aatacatcattaacatgttgtaataaaaaagtcagctcttcacacatcatatcttcctctacatgtatttgtccaccttctacatagggacaaagccaga |
307 |
Q |
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| T |
1109767 |
aatacatcattaacatgttgtaataaaaaagtcagctcttcacacatcatatcttcctc-acatgtatttgtccaccttctacatagggacaaagccaga |
1109865 |
T |
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| Q |
308 |
aacttagtttagggaggaccaagttggcagtataat |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1109866 |
aacttagtttagggaggaccaagttggcagtataat |
1109901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 30194659 - 30194690
Alignment:
| Q |
22 |
tcatagtaataatgcttaaataagtttgtaaa |
53 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30194659 |
tcatagtaataatgcttaaataagtttgtaaa |
30194690 |
T |
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