View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17479_low_5 (Length: 267)

Name: NF17479_low_5
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17479_low_5
NF17479_low_5
[»] chr6 (20 HSPs)
chr6 (57-248)||(26631597-26631798)
chr6 (57-248)||(26737572-26737773)
chr6 (42-179)||(26651232-26651368)
chr6 (42-179)||(26757200-26757336)
chr6 (42-248)||(26966226-26966443)
chr6 (38-122)||(31289434-31289518)
chr6 (183-248)||(31289531-31289596)
chr6 (116-248)||(27422358-27422502)
chr6 (171-248)||(26853924-26854001)
chr6 (39-94)||(27702310-27702365)
chr6 (170-248)||(27652001-27652079)
chr6 (42-94)||(26853741-26853793)
chr6 (39-94)||(27714077-27714132)
chr6 (195-248)||(27713907-27713960)
chr6 (183-234)||(26640960-26641011)
chr6 (183-234)||(26746926-26746977)
chr6 (42-94)||(26890187-26890239)
chr6 (42-93)||(27586680-27586731)
chr6 (194-248)||(26890735-26890789)
chr6 (113-153)||(26890615-26890655)
[»] scaffold0003 (1 HSPs)
scaffold0003 (116-248)||(64861-65005)
[»] chr8 (2 HSPs)
chr8 (154-248)||(29269773-29269867)
chr8 (39-94)||(29269970-29270025)
[»] chr4 (5 HSPs)
chr4 (46-154)||(18674281-18674389)
chr4 (44-154)||(18692361-18692462)
chr4 (42-107)||(5083209-5083274)
chr4 (44-93)||(18718912-18718961)
chr4 (113-154)||(18650625-18650666)
[»] scaffold0349 (2 HSPs)
scaffold0349 (39-94)||(17812-17867)
scaffold0349 (195-248)||(17984-18037)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 26631597 - 26631798
Alignment:
Q  57 ttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtacacaaattggaatcctt 156  Q
    |||||| |||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |    
T  26631597 ttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattggaatccgt 26631696  T
Q  157 ataggaagagtaa----------atcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggta 246  Q
    |||| ||||||||          ||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  26631697 atagaaagagtaatcagatgaagatccgaactcggaagtttccgagacagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggta 26631796  T
Q  247 tt 248  Q
    ||    
T  26631797 tt 26631798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 26737572 - 26737773
Alignment:
Q  57 ttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtacacaaattggaatcctt 156  Q
    |||||| |||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |    
T  26737572 ttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattggaatccgt 26737671  T
Q  157 ataggaagagtaa----------atcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggta 246  Q
    |||| ||||||||          ||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  26737672 atagaaagagtaatcagatgaagatccgaactcggaagtttccgagacagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggta 26737771  T
Q  247 tt 248  Q
    ||    
T  26737772 tt 26737773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 26651232 - 26651368
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtaca 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||| |||| |||||||||||||||| ||||||||    
T  26651232 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttg-agcttagttatactggttgcagatttttgagaatttcaatttcagtaca 26651330  T
Q  142 caaattggaatccttataggaagagtaaatcagaactc 179  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  26651331 caaattggaatccttatagaaagagtaaataagaactc 26651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 26757200 - 26757336
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtaca 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||| |||| |||||||||||||||| ||||||||    
T  26757200 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttg-agcttagttatactggttgcagatttttgagaatttcaatttcagtaca 26757298  T
Q  142 caaattggaatccttataggaagagtaaatcagaactc 179  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  26757299 caaattggaatccttatagaaagagtaaataagaactc 26757336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 248
Target Start/End: Original strand, 26966226 - 26966443
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtaca 141  Q
    ||||||||| ||||||||||||||||||||| || ||||||||  |||| ||  ||| || |||||||| ||||||||  ||||||||||||| ||||||    
T  26966226 cacagaatccgttggttgttcgaaagggcagcgaataatgctacacttttcatctcagttttactggttgcagagtttgaagaatttcaatcttagtaca 26966325  T
Q  142 caaattggaatccttataggaagagtaa-----------atcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctct 230  Q
     |||||||||||||||||| ||||||||           |||||||||| ||||||| ||||| |||||||||||||||| ||||| |||||||||||||    
T  26966326 aaaattggaatccttatagaaagagtaatgcagatgaagatcagaactcggaagttttcgagatagaacttgtgtagcagcaacaaaactgtatggctct 26966425  T
Q  231 tgtgattaataaggtatt 248  Q
    || |||||||||||||||    
T  26966426 tgagattaataaggtatt 26966443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 31289434 - 31289518
Alignment:
Q  38 gcagcacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttga 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289434 gcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttga 31289518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 31289531 - 31289596
Alignment:
Q  183 agtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289531 agtttccgagacagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 31289596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 27422502 - 27422358
Alignment:
Q  116 gttttgagaatttcaatctcagtacacaaattggaatccttataggaagagtaaa-----------tcagaactcagaagtttcc-gagacagaacttgt 203  Q
    ||||||||||||||||||| |||||||||| | |||||| ||||| |||| ||||           |||||||||||||||||   |||||||||||||     
T  27422502 gttttgagaatttcaatcttagtacacaaacttgaatccgtatagaaagattaaagcagatgaagatcagaactcagaagttttttgagacagaacttga 27422403  T
Q  204 gtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  27422402 gtagcagaaacaacactgtatggctcttgtaattaataaggtatt 27422358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 26853924 - 26854001
Alignment:
Q  171 tcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    ||||||||  ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  26853924 tcagaacttggaagtgtccgagaccgaacttgtgtagcagcaacaacactgtatggctcttgtgattaataagttatt 26854001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 27702365 - 27702310
Alignment:
Q  39 cagcacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  27702365 cagcacagaatccgttggttgttcgaaaggacagtgagtaatgatatgctttgcag 27702310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 27652079 - 27652001
Alignment:
Q  170 atcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    |||||||||  |||||||| ||||||||||||| ||||||| |||||||||||||  || |||||||||||||| ||||    
T  27652079 atcagaacttggaagtttctgagacagaacttgcgtagcagcaacaacactgtataacttttgtgattaataagttatt 27652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 26853741 - 26853793
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26853741 cacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttgcag 26853793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 27714132 - 27714077
Alignment:
Q  39 cagcacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  27714132 cagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcag 27714077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 27713960 - 27713907
Alignment:
Q  195 agaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  27713960 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttatt 27713907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 26640960 - 26641011
Alignment:
Q  183 agtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtg 234  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||||||||    
T  26640960 agtttctgagacagaacttgtgtagacgcaacaacactgtatggctcttgtg 26641011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 26746926 - 26746977
Alignment:
Q  183 agtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtg 234  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||||||||    
T  26746926 agtttctgagacagaacttgtgtagacgcaacaacactgtatggctcttgtg 26746977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 26890187 - 26890239
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    ||||||||| || |||||||| |||||||||||||||| | ||||||||||||    
T  26890187 cacagaatccgtcggttgttctaaagggcagtgagtaacggtatgctttgcag 26890239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 27586731 - 27586680
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgca 93  Q
    |||||||||||| | ||||| |||| |||||||||||||| |||||||||||    
T  27586731 cacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttgca 27586680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 26890735 - 26890789
Alignment:
Q  194 cagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    ||||||||||||  ||| |||||||| | ||||||||||||||||||||| ||||    
T  26890735 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttatt 26890789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 26890615 - 26890655
Alignment:
Q  113 agagttttgagaatttcaatctcagtacacaaattggaatc 153  Q
    |||||| ||||||||||||||  ||||||||||||||||||    
T  26890615 agagttatgagaatttcaatcgtagtacacaaattggaatc 26890655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 64861 - 65005
Alignment:
Q  116 gttttgagaatttcaatctcagtacacaaattggaatccttataggaagagtaaa-----------tcagaactcagaagtttcc-gagacagaacttgt 203  Q
    ||||||||||||||||||| |||||||||| | |||||| ||||| |||| ||||           |||||||||||||||||   |||||||||||||     
T  64861 gttttgagaatttcaatcttagtacacaaacttgaatccgtatagaaagattaaagcagatgaagatcagaactcagaagttttttgagacagaacttga 64960  T
Q  204 gtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  64961 gtagcagaaacaacactgtatggctcttgtaattaataaggtatt 65005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 29269867 - 29269773
Alignment:
Q  154 cttataggaagagtaaatcagaactcagaagtttccgagacagaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    ||||||| | |||||||||||||||  ||| |||| ||  ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  29269867 cttatagaaggagtaaatcagaacttggaattttctgaagcagaacttgtgtagcagcaacaacactgtatggctcttgtgattattaagttatt 29269773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 29270025 - 29269970
Alignment:
Q  39 cagcacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  29270025 cagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcag 29269970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 18674389 - 18674281
Alignment:
Q  46 gaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtacacaaa 145  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||||  ||| |||     |||  |||||||||||||||||||||| |||| |||||    
T  18674389 gaatccgttggttgatcgaaagggcagtgagtattgatatgctttgcacctcagttagctcagttggagagttttgagaatttcaatcttagtagacaaa 18674290  T
Q  146 ttggaatcc 154  Q
    |||||||||    
T  18674289 ttggaatcc 18674281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 18692462 - 18692361
Alignment:
Q  44 cagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttgagaatttcaatctcagtacaca 143  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||  |||         |||  |||||||||||||||||||||| |||| |||    
T  18692462 cagaatccgttggttgttcgaaagggcagtgagtattgatatgctttgcacctca---------gttggagagttttgagaatttcaatcttagtagaca 18692372  T
Q  144 aattggaatcc 154  Q
    |||| ||||||    
T  18692371 aattagaatcc 18692361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 5083209 - 5083274
Alignment:
Q  42 cacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactg 107  Q
    ||||||||| || | ||||| ||||||||||||||||||| |||||||||||| ||| || |||||    
T  5083209 cacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttgtactg 5083274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 18718961 - 18718912
Alignment:
Q  44 cagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgca 93  Q
    |||| ||||||||||||||||| |||||||||||| || |||||||||||    
T  18718961 cagattctgttggttgttcgaacgggcagtgagtattgatatgctttgca 18718912  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 18650666 - 18650625
Alignment:
Q  113 agagttttgagaatttcaatctcagtacacaaattggaatcc 154  Q
    ||||||||||||| |||||||| |||| ||||||||||||||    
T  18650666 agagttttgagaaattcaatcttagtagacaaattggaatcc 18650625  T

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Target: scaffold0349 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 17812 - 17867
Alignment:
Q  39 cagcacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgcag 94  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  17812 cagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcag 17867  T

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Target: scaffold0349; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 17984 - 18037
Alignment:
Q  195 agaacttgtgtagcagaaacaacactgtatggctcttgtgattaataaggtatt 248  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  17984 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttatt 18037  T

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