View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17479_low_6 (Length: 266)
Name: NF17479_low_6
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17479_low_6 |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 37245164 - 37245410
Alignment:
| Q |
1 |
tggagtcacagcaggagcggcaacgggagaagcagcggcagctggagaatcaggagcggcagcgggaggaggagatgctggtgagttgacggcgaacggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
37245164 |
tggagtcacagcaggagcggcaacgggagaagcagcggcagctggagaaccaggagcggcagcgggaggagcagatgctggtgagttgatggcgaacggt |
37245263 |
T |
|
| Q |
101 |
gaaggagatggagcaccaggaagaggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37245264 |
gaaggagatgaagcaccaggaagaggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatg |
37245363 |
T |
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| Q |
201 |
atggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaa |
247 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
37245364 |
atggtggtgatcgagcaactgtggaatccagcagcagtgcaaccaaa |
37245410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 37242199 - 37242248
Alignment:
| Q |
65 |
ggaggaggagatgctggtgagttgacggcgaacggtgaaggagatggagc |
114 |
Q |
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| T |
37242199 |
ggaggaggagatgttggatagttaactgcgaacggtgaaggagatggagc |
37242248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 121 - 2
Alignment:
| Q |
125 |
ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg |
224 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||| |||||| | || |
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| T |
121 |
ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttggg---tgatgatggtggtgatctagcaacggcgg |
25 |
T |
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| Q |
225 |
aacccagcagcagtgcaaccaaa |
247 |
Q |
| |
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||| ||| | ||||||||||||| |
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| T |
24 |
aactcagaaacagtgcaaccaaa |
2 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 439 - 402
Alignment:
| Q |
125 |
ggagcagatgccactggtgagttagcggagggagaaat |
162 |
Q |
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|||||||||||||| | ||||||||||||||||||||| |
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| T |
439 |
ggagcagatgccaccgttgagttagcggagggagaaat |
402 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 165154 - 165039
Alignment:
| Q |
125 |
ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg |
224 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||| | ||||||||||||||||||||||| | || |
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| T |
165154 |
ggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcgg |
165058 |
T |
|
| Q |
225 |
aacccagcagcagtgcaac |
243 |
Q |
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||| ||| | ||||||||| |
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| T |
165057 |
aactcagaaacagtgcaac |
165039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 14248572 - 14248687
Alignment:
| Q |
125 |
ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg |
224 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||| | ||||||||||||||||||||||| | || |
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| T |
14248572 |
ggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcgg |
14248668 |
T |
|
| Q |
225 |
aacccagcagcagtgcaac |
243 |
Q |
| |
|
||| ||| | ||||||||| |
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| T |
14248669 |
aactcagaaacagtgcaac |
14248687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 14317161 - 14317238
Alignment:
| Q |
167 |
ggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaa |
247 |
Q |
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|||||||||||||||||| || |||| |||||||||||||||||||||||| | ||||| ||| | ||||||||||||| |
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| T |
14317161 |
ggtgatggaaacggagaagacttggg---tgatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaa |
14317238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 3688 - 3762
Alignment:
| Q |
125 |
ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgat |
199 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||| |||||| |
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| T |
3688 |
ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggggatgat |
3762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 1320 - 1256
Alignment:
| Q |
142 |
tgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtg |
206 |
Q |
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||||||||| ||||||||||| ||| ||||||||||||||| || |||| |||| |||||||| |
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| T |
1320 |
tgagttagctgagggagaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtg |
1256 |
T |
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