View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17479_low_8 (Length: 220)

Name: NF17479_low_8
Description: NF17479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17479_low_8
NF17479_low_8
[»] chr6 (19 HSPs)
chr6 (5-220)||(26627957-26628172)
chr6 (5-220)||(26733934-26734149)
chr6 (1-220)||(27702324-27702543)
chr6 (52-220)||(27714091-27714259)
chr6 (1-220)||(26853562-26853779)
chr6 (7-218)||(26828312-26828524)
chr6 (60-212)||(26966104-26966256)
chr6 (1-219)||(26890006-26890224)
chr6 (7-122)||(27652343-27652458)
chr6 (60-220)||(26651110-26651270)
chr6 (60-220)||(26757078-26757238)
chr6 (60-176)||(27422522-27422638)
chr6 (1-141)||(31291317-31291457)
chr6 (7-141)||(26640621-26640755)
chr6 (7-141)||(26746587-26746721)
chr6 (60-220)||(26631460-26631620)
chr6 (60-220)||(26737435-26737595)
chr6 (151-220)||(31289407-31289476)
chr6 (131-220)||(27652227-27652316)
[»] scaffold0349 (1 HSPs)
scaffold0349 (52-220)||(17685-17853)
[»] chr8 (1 HSPs)
chr8 (52-220)||(29269984-29270152)
[»] scaffold0003 (1 HSPs)
scaffold0003 (60-176)||(64725-64841)
[»] chr4 (4 HSPs)
chr4 (45-85)||(18692521-18692561)
chr4 (45-85)||(18719020-18719060)
chr4 (45-85)||(18674450-18674490)
chr4 (96-220)||(5083123-5083247)
[»] chr1 (1 HSPs)
chr1 (93-172)||(26141211-26141290)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 26627957 - 26628172
Alignment:
Q  5 agttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgac 104  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26627957 agttgaacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgac 26628056  T
Q  105 tgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26628057 tgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 26628156  T
Q  205 aagggcagtgagtaat 220  Q
    | ||| ||||||||||    
T  26628157 atgggaagtgagtaat 26628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 26733934 - 26734149
Alignment:
Q  5 agttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgac 104  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26733934 agttgaacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgac 26734033  T
Q  105 tgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734034 tgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcga 26734133  T
Q  205 aagggcagtgagtaat 220  Q
    | ||| ||||||||||    
T  26734134 atgggaagtgagtaat 26734149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27702543 - 27702324
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  27702543 ataaagttgaacatggagaatccattcccgatgatttcagcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttt 27702444  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||||||||||||||||||||| |||| ||||||||||||| | ||||| ||||||| | | ||||||||||||||| ||  ||| |||||||||| |||    
T  27702443 tgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgt 27702344  T
Q  201 tcgaaagggcagtgagtaat 220  Q
    |||||||| |||||||||||    
T  27702343 tcgaaaggacagtgagtaat 27702324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 27714259 - 27714091
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  27714259 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 27714160  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||| ||   || |||||||||| ||||||||||||||| |||||||    
T  27714159 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaat 27714091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26853562 - 26853779
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||||||||| |||||||||| |||||| | |||| |||||||||| ||||| |||||  |||||||||||||||||||||||| | || |||||||||    
T  26853562 ataaagttgaaaatggagaatccattcccaacgatttcagcctgttgacggtagtttacataacttttctctaaccaaaactaag-aattacttgttctt 26853660  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||| || |||||||| | | |||  | | ||||||||||| | ||||| ||||| |||||| ||||| ||||||   ||| |||||||| |||||||||    
T  26853661 tgaccgtgcattgtca-gtatccatctgtggtcatctggctatttgcattgtcattcaagatatctaggggttgcgcacaccacaaaatctgttggctgt 26853759  T
Q  201 tcgaaagggcagtgagtaat 220  Q
    ||||||||||||||||||||    
T  26853760 tcgaaagggcagtgagtaat 26853779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 26828312 - 26828524
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgca-gcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgact 105  Q
    ||||||||||| |||| ||||||| ||||| || ||| |||||| |||||||||  |||||||||||| ||||||||||| | ||||||||| |||||||    
T  26828312 ttgaacatggaaaatccattcccgttgatttcaagccagttgtcagtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgact 26828411  T
Q  106 gtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaa 205  Q
    ||||||||||||||  |||  | |||| |||||||| |  |||| |||||||  ||||||||| ||||||| | || |||||||||||| | || |||||    
T  26828412 gtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaa 26828511  T
Q  206 agggcagtgagta 218  Q
    |||||| ||||||    
T  26828512 agggcaatgagta 26828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 26966104 - 26966256
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||| |||||||||||||   || |||||||||||||||||||||||||||| ||||  | ||||||||||||| | ||||  ||||||| |    
T  26966104 gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcga 26966203  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcag 212  Q
     |||||||||| |||||||||| ||| |||||||||| |||||||||||||||    
T  26966204 catgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcag 26966256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 26890006 - 26890224
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||| || |||||| |||||| | | ||||||| | ||||||||||| ||| |||| | ||||||||||||||||||||||||  | ||  || || ||    
T  26890006 ataaaattaaacatgaagaatcaagtgccgatgaattcagcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttattttttatt 26890105  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgt 200  Q
    |||||||||||||||||||||| |  | ||||||||||||| | |  |  ||||||  |||||||||||||||| | |||| ||| ||||||| || |||    
T  26890106 tgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgtcggttgt 26890205  T
Q  201 tcgaaagggcagtgagtaa 219  Q
    || ||||||||||||||||    
T  26890206 tctaaagggcagtgagtaa 26890224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 27652458 - 27652343
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| |||||||  ||||| | |||| |||||||||| ||||||| ||||||||||||||||||||||||||||| | || ||||||| ||||||     
T  27652458 ttgaacatagagaatcctttcccaacgatttcagcctgttgccggtaatatacgcaacttttctctaaccaaaactaagcatttacttgttcattgactt 27652359  T
Q  107 tacattgtcaggaaac 122  Q
    ||||||||||||||||    
T  27652358 tacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26651110 - 26651270
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||| |||||| |||||||||||| | | |  ||||||||||| |||||||||||||||||||||  | |||||| ||| || | ||||| ||||||| |    
T  26651110 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26651209  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
     |||||||||| || || |||| ||| |||| ||||| |||||||||||||||||||||||    
T  26651210 tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaat 26651270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26757078 - 26757238
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||| |||||| |||||||||||| | | |  ||||||||||| |||||||||||||||||||||  | |||||| ||| || | ||||| ||||||| |    
T  26757078 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26757177  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
     |||||||||| || || |||| ||| |||| ||||| |||||||||||||||||||||||    
T  26757178 tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaat 26757238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 27422638 - 27422522
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||| ||||||| |    
T  27422638 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 27422539  T
Q  160 gatgtctagaggttgct 176  Q
     |||||||||| |||||    
T  27422538 catgtctagagattgct 27422522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31291317 - 31291457
Alignment:
Q  1 ataaagttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctt 100  Q
    ||||| ||||||||| |||||  ||||  ||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  31291317 ataaaattgaacatgaagaatgcattcttgatgaattcagcctgtagtcggtaatttacgcaacttttctctaacaaaaactaagtattttcttgttctt 31291416  T
Q  101 tgactgtacattgtcaggaaaccacatttagtcatctggct 141  Q
     || |||  |||| ||||||||||  | || ||||||||||    
T  31291417 cgattgtgaattgccaggaaaccatctgtaatcatctggct 31291457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 26640621 - 26640755
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| ||||||| |||||||   ||| |||| |||||||| ||||||||| | |||||||||| ||||||||||| | || || ||||||||||||    
T  26640621 ttgaacatagagaatccattcccgtcaatttcagcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactg 26640720  T
Q  107 tacattgtcaggaaaccacatttagtcatctggct 141  Q
    ||||||||||||||||||  | |||| ||||||||    
T  26640721 tacattgtcaggaaaccatctgtagtgatctggct 26640755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 26746587 - 26746721
Alignment:
Q  7 ttgaacatggagaatctattcccgatgattgcagcctgttgtcggtaatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactg 106  Q
    |||||||| ||||||| |||||||   ||| |||| |||||||| ||||||||| | |||||||||| ||||||||||| | || || ||||||||||||    
T  26746587 ttgaacatagagaatccattcccgtcaatttcagcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactg 26746686  T
Q  107 tacattgtcaggaaaccacatttagtcatctggct 141  Q
    ||||||||||||||||||  | |||| ||||||||    
T  26746687 tacattgtcaggaaaccatctgtagtgatctggct 26746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26631460 - 26631620
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||||||||| ||| | || |||| |||| || |||||||| ||||||| |||  | ||||||||||||    ||||| ||| | |||    
T  26631460 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa 26631558  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggc-tgttcgaaagggcagtgagtaat 220  Q
     |||||||||||||||| |||  ||| ||||||||  | ||||| |||||||||||||||||    
T  26631559 catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaat 26631620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 26737435 - 26737595
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||||||||| ||| | || |||| |||| || |||||||| ||||||| |||  | ||||||||||||    ||||| ||| | |||    
T  26737435 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa 26737533  T
Q  160 gatgtctagaggttgcttgcacaacaaaatccgttggc-tgttcgaaagggcagtgagtaat 220  Q
     |||||||||||||||| |||  ||| ||||||||  | ||||| |||||||||||||||||    
T  26737534 catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaat 26737595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 31289407 - 31289476
Alignment:
Q  151 gtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    ||||||| | |||||||| ||||||| |||  ||| |||||||||| |||||||||||||||||||||||    
T  31289407 gtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaat 31289476  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 27652316 - 27652227
Alignment:
Q  131 gtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    ||||||||||| | ||||| ||||||  | |||||||||  ||||| |||| ||||||||| |||| ||||| |||||||||||| ||||    
T  27652316 gtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaagggcagtgactaat 27652227  T

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Target: scaffold0349 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 17685 - 17853
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  17685 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 17784  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||| ||   || |||||||||| ||||||||||||||| |||||||    
T  17785 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaat 17853  T

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Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 29270152 - 29269984
Alignment:
Q  52 taatttacgcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatgg 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |    
T  29270152 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 29270053  T
Q  152 tcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaaagggcagtgagtaat 220  Q
    |||||| | | ||||||||||||||  ||  ||| |||||||| | |||||||||||||||||||||||    
T  29270052 tcatgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaat 29269984  T

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Target: scaffold0003 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 64725 - 64841
Alignment:
Q  60 gcaacttttctctaaccaaaactaagtactttcttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaa 159  Q
    |||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||||||||||  | ||||||||||||| | ||||| ||||||| |    
T  64725 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 64824  T
Q  160 gatgtctagaggttgct 176  Q
     |||||||||| |||||    
T  64825 catgtctagagattgct 64841  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18692561 - 18692521
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18692561 ttgtcggtaatttacacaacttttctctaaccaaaactaag 18692521  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18719060 - 18719020
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18719060 ttgtcggtaatttacacaacttttctctaaccaaaactaag 18719020  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18674490 - 18674450
Alignment:
Q  45 ttgtcggtaatttacgcaacttttctctaaccaaaactaag 85  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  18674490 ttgttggtaatttacacaacttttctctaaccaaaactaag 18674450  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 5083123 - 5083247
Alignment:
Q  96 ttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttg 195  Q
    |||||| ||||||||||| ||| ||||||  | ||||  ||||||| | ||||| ||||| | |||||||||||||| |||    | ||| ||||||| |    
T  5083123 ttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatacgagatgtctagaggtggctcaatccacagaatccgtgg 5083222  T
Q  196 gctgttcgaaagggcagtgagtaat 220  Q
      |||| ||||||||||||||||||    
T  5083223 attgtttgaaagggcagtgagtaat 5083247  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 26141211 - 26141290
Alignment:
Q  93 ttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcatggtcatgcaagatgtctagaggt 172  Q
    ||||||||||| ||||||||||||| ||||||  | ||||  ||||||| | ||||| ||||| | ||||||||||||||    
T  26141211 ttgttctttgaatgtacattgtcagaaaaccatctatagttgtctggctatttgcattgtcattctagatgtctagaggt 26141290  T

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