View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_high_15 (Length: 233)
Name: NF1747_high_15
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 478561 - 478780
Alignment:
| Q |
1 |
accagtgtgagtaatagtttaatgttcaatcaaatttttgataatactagtttttgtctaagacattatagggtgatgtataagagaccttaagctaaga |
100 |
Q |
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| T |
478561 |
accagtgtgagtaatagtttaatgttcaatcaaacttttgataatactagtttttgtctaagacattatagggtgatgtataagagaccttaagctaaga |
478660 |
T |
|
| Q |
101 |
aattgattttgatctattttttaaactgcgatgatcataggaactcagattttattgttccagacctcaaattaccaaataggaacatagagatgattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
478661 |
aattgattttgatctattttttaaactgcgatgatcataggaactcggattttattgttccggacctcaaattagcaaataggaacatagaggggattca |
478760 |
T |
|
| Q |
201 |
tacaaatcctaatcaccatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
478761 |
tacaaatcctaatcaccatc |
478780 |
T |
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