View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_high_16 (Length: 224)
Name: NF1747_high_16
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_high_16 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1606502 - 1606279
Alignment:
| Q |
1 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606502 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
1606403 |
T |
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| Q |
101 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1606402 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagat |
1606303 |
T |
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| Q |
201 |
ctaaagcctgttgttgacaagtac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1606302 |
ctaaagcctgttgttgacaagtac |
1606279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1629800 - 1629577
Alignment:
| Q |
1 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
1629800 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaacgccgcagtggtattccaaaattgtaacattttcgcaagaaagccttt |
1629701 |
T |
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| Q |
101 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggat |
200 |
Q |
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| T |
1629700 |
agatggccaagcaaacatgatcactgcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagat |
1629601 |
T |
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| Q |
201 |
ctaaagcctgttgttgacaagtac |
224 |
Q |
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||||| |||||||||||||||||| |
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| T |
1629600 |
ctaaaacctgttgttgacaagtac |
1629577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10820898 - 10821121
Alignment:
| Q |
1 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
10820898 |
aattttacagacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtggtattccaaaattgcaacattttcgcaagaaaaccttt |
10820997 |
T |
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| Q |
101 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggat |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10820998 |
agatggccaagctaacatgatcactgcccaaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagat |
10821097 |
T |
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| Q |
201 |
ctaaagcctgttgttgacaagtac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10821098 |
ctaaagcctgttgttgacaagtac |
10821121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 1623616 - 1623401
Alignment:
| Q |
9 |
cgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||| ||||| ||||| | |
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| T |
1623616 |
cgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggcc |
1623517 |
T |
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| Q |
109 |
aagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcc |
208 |
Q |
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| T |
1623516 |
aagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcc |
1623417 |
T |
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| Q |
209 |
tgttgttgacaagtac |
224 |
Q |
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|||||||||||||||| |
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| T |
1623416 |
tgttgttgacaagtac |
1623401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 2576071 - 2576132
Alignment:
| Q |
21 |
atctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacat |
82 |
Q |
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|||||||||||||| |||||||| || ||||| || || || |||||||||||||||||||| |
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| T |
2576071 |
atctatggcaccgtcgacttcattttcggcaacgcagctgtagttttccaaaattgtaacat |
2576132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18781318 - 18781095
Alignment:
| Q |
1 |
aattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaaccttt |
100 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
18781318 |
aattttacagacaatgcttcatctatggcaccgtcgactttatctttggcaacgccgcagtagtgttccaaaattgtaacattttcgcaagaaagccttt |
18781219 |
T |
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| Q |
101 |
agatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggat |
200 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
18781218 |
agatggccaagcaaacatgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagat |
18781119 |
T |
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| Q |
201 |
ctaaagcctgttgttgacaagtac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
18781118 |
ctaaagcctgttgttgacaagtac |
18781095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 12802865 - 12802719
Alignment:
| Q |
20 |
catctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatg |
119 |
Q |
| |
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||||||||||||||| ||||||||||||||||| || || || ||||||||||| || | ||| | | |||| |||||| | || ||||| |||||| |
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| T |
12802865 |
catctatggcaccgttgacttcatctttggcaacgcagccgtagttttccaaaactgcatgattcttgttagaaggcctttaaacggccaagcaaacatg |
12802766 |
T |
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| Q |
120 |
atcacagcccaaggtcgaggtgacccattccaaaacactggaatttc |
166 |
Q |
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||||| ||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
12802765 |
atcacggcccaaggtcgtgatgacccatttcaaaacactggaatttc |
12802719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 8767056 - 8767130
Alignment:
| Q |
20 |
catctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaa |
94 |
Q |
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|||||||||||| || || ||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |
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| T |
8767056 |
catctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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