View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_high_4 (Length: 386)
Name: NF1747_high_4
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 10972309 - 10971953
Alignment:
| Q |
20 |
catgcacctaatgactttcatggaagtggcaaaaccaaagtggtatgaacgtgctctggtcataactgtccaaggtgttttcttcaatgcttatttctta |
119 |
Q |
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| T |
10972309 |
catgcatctaatgactttcatggaagtggcaaaaccaaagtggtatgaacgtgctctggtcataactgtccaaggtgttttcttcaatgcttatttctta |
10972210 |
T |
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| Q |
120 |
ggctatttgctctcaccaaaatttgcacaccgtatggttggttaccttgaggaggaagctattcactcatacactgagtttctcaaggaacttgataaag |
219 |
Q |
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| T |
10972209 |
ggctatttgctctcaccaaaatttgcacaccgtatggttggttaccttgaggaggaagctattcactcatacactgagtttctcaaggaacttgataaag |
10972110 |
T |
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| Q |
220 |
gcaacatcgaaaacgttcctgctccagctattgctattgactattggcagcttccccaaaactctactttaagggatgttgtagaggttgtcagagctga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10972109 |
gcaacatcgaaaacgttcctgctccagctattgctattgactattggcagcttccccaaaactctactttaagggatgttgtagaggttgtcagagctga |
10972010 |
T |
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| Q |
320 |
tgaagcacatcatcgcgatgttaaccactttgcatcggtatgttgtctatccctttg |
376 |
Q |
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| T |
10972009 |
tgaagcacatcatcgcgatgttaaccattttgcttcggtatgttgtctatccctttg |
10971953 |
T |
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