View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1747_high_5 (Length: 348)
Name: NF1747_high_5
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 12160407 - 12160066
Alignment:
| Q |
1 |
cctatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12160407 |
cctatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattcttttctattgaatca |
12160308 |
T |
|
| Q |
101 |
cgctacgtatattcctttcagcaatatgttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12160307 |
cactacgtatattcctttcagcaatatgttctaatcaagttacctttatgtgctttctctaattttattcatttcatgtgccccactttcaaccttttat |
12160208 |
T |
|
| Q |
201 |
atcagggtcgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgc |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12160207 |
atgagggtggtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgc |
12160108 |
T |
|
| Q |
301 |
gacatatattcctttctgcaagtttttccctattcttatcac |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12160107 |
gacatatattcctttctgcaagtttttccctattcttatcac |
12160066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 2 - 343
Target Start/End: Complemental strand, 12154090 - 12153743
Alignment:
| Q |
2 |
ctatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcac |
101 |
Q |
| |
|
|||||||| | ||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
12154090 |
ctatggggattgtggtttttagagccacttttaatcttttcccatttctcatcaaggaatcacaatatatttatac-tttattaatttcttttgaatcac |
12153992 |
T |
|
| Q |
102 |
gctacgtatattcctttcagcaat-------atgttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaacc |
194 |
Q |
| |
|
||||| | ||||||||| ||| | |||||||||||| | |||||||||||| |||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
12153991 |
gctacatctattcctttttgcatttttatgcatgttctaatcatgcagcctttatgtgctttctctaattttattcatttcatgtgccctacgttcaacc |
12153892 |
T |
|
| Q |
195 |
ttttatatcagggtcgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaa |
294 |
Q |
| |
|
|||| ||| |||| ||||||| | ||| | |||||||||||||| || ||||||||| ||||||| | || ||||| | ||||||||||||||||||| |
|
|
| T |
12153891 |
ttttctatgggggtggtggtttgtcgaggcgcttttaatcttttcacatttctcatcaaggaatcatggtacatttatacctttattcctttctattgaa |
12153792 |
T |
|
| Q |
295 |
ccacgcgacatatattcctttctgcaagtttttccctattcttatcact |
343 |
Q |
| |
|
||| |||| || |||||||||| ||||||||||||||| |||||| |
|
|
| T |
12153791 |
tcacattacatctagtcctttctgcgggtttttccctattctaatcact |
12153743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 12153673 - 12153379
Alignment:
| Q |
14 |
tggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcacgctacgtatatt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| | |||| |
|
|
| T |
12153673 |
tggtttgtagagccacttttaatcttttcccacttctcatcacagaatcacaatacatttatacctttattcctttctattgaatcacgctacatctatt |
12153574 |
T |
|
| Q |
114 |
cctttcagcaatat-------gttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttatatcagg |
206 |
Q |
| |
|
|||||| ||| | |||||||||| | |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
12153573 |
cctttctgcaggtttttccctgttctaatcacgctacctttatgtgctttctataattttcttcatttcatgtgccccactttcaaccttttctatgggc |
12153474 |
T |
|
| Q |
207 |
gtcgtggtttttagagccacttttaatcttttcccac--ttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgc |
300 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||||| ||||||||| | |||||| ||| ||||| | ||||||| ||||||| ||| ||||| |
|
|
| T |
12153473 |
ggtgtggtttttagagacac-tttaatcttttcccacatttctcatcacgaaatcacaatacatttatacatttattcatttctatagaatcacgc |
12153379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 342
Target Start/End: Complemental strand, 12153887 - 12153542
Alignment:
| Q |
2 |
ctatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcac |
101 |
Q |
| |
|
|||||||||||||||||||| ||| | || ||||||||||| || | ||||||||||||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
12153887 |
ctatgggggtggtggtttgtcgaggcgcttttaatcttttcacatttctcatcaaggaatcatggtacatttatacctttattcctttctattgaatcac |
12153788 |
T |
|
| Q |
102 |
gctacgtatattcctttcagcaatatgttc--taatcaagt---tacctttatgtgctatctctaattttattcatttcatgtgccccactttcaacctt |
196 |
Q |
| |
|
||| | || ||||||| || | ||| || || | | |||||||||||||| | |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
12153787 |
attacatctagtcctttctgcgggtttttccctattctaatcactacctttatgtgctttatctaattttattcatttcatgtgctccaaattcaacctt |
12153688 |
T |
|
| Q |
197 |
ttatatcagggtcgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaacc |
296 |
Q |
| |
|
|| ||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||||||||||||||||||| | |
|
|
| T |
12153687 |
ttctatgggagctatggtttgtagagccacttttaatcttttcccacttctcatcacagaatcacaatacatttatacctttattcctttctattgaatc |
12153588 |
T |
|
| Q |
297 |
acgcgacatatattcctttctgcaagtttttccctattcttatcac |
342 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
12153587 |
acgctacatctattcctttctgcaggtttttccctgttctaatcac |
12153542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 12160208 - 12159873
Alignment:
| Q |
3 |
tatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcacg |
102 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||| ||||||||| | |||||| ||||||||||| |||| |
|
|
| T |
12160208 |
tatgagggtggtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacg |
12160109 |
T |
|
| Q |
103 |
ctacgtatattcctttcagcaatatgttc-------taatcaagttac----ctttatgtgctatctctaattttattcatttcatgtgccccactttca |
191 |
Q |
| |
|
| || |||||||||||| |||| | ||| | |||| | ||| ||| ||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
12160108 |
cgacatatattcctttctgcaagtttttccctattcttatcacgctacgtaccttaatgtgctttatctaattttattcatttcatgtgccccactttca |
12160009 |
T |
|
| Q |
192 |
accttttatatcagggtcgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctatt |
291 |
Q |
| |
|
||||||| || ||||| || |||| || ||| |||||||||||| | | ||||||||||| ||||||||| || ||||| | |||||||||||||||| |
|
|
| T |
12160008 |
accttttttacaagggttgttgtttgtaaagcaacttttaatcttgtacaacttctcatcaaggaatcacggtacatttatacctttattcctttctatt |
12159909 |
T |
|
| Q |
292 |
gaaccacgcgacatatattcctttctgcaagttttt |
327 |
Q |
| |
|
|| ||||| |||| ||||||||| |||| |||||| |
|
|
| T |
12159908 |
taatcacgctacatctattcctttatgcaggttttt |
12159873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 12154157 - 12153970
Alignment:
| Q |
132 |
taatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttatatcagggtcgtggtttttagagccactttta |
231 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
12154157 |
taataaagttacctttatgtgctttctctaattttattcatttcatatgccccactttcaaccttttctatggggattgtggtttttagagccactttta |
12154058 |
T |
|
| Q |
232 |
atcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgcgacatatattcctttctgca |
320 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||| | | |||||| ||||| ||||| ||||| |||| ||||||||| |||| |
|
|
| T |
12154057 |
atcttttcccatttctcatcaaggaatcacaatatattt-atactttattaatttcttttgaatcacgctacatctattcctttttgca |
12153970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 126 - 321
Target Start/End: Complemental strand, 12160479 - 12160284
Alignment:
| Q |
126 |
atgttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttatatcagggtcgtggtttttagagcca |
225 |
Q |
| |
|
|||||||||||| | | |||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |
|
|
| T |
12160479 |
atgttctaatcacgcttcctttatgtgttttctctaattttattcgtttcatgtgccccactttcaacctttcctatgggggtggtggtttgtagagcca |
12160380 |
T |
|
| Q |
226 |
cttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgcgacatatattcctttctgcaa |
321 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||||| ||||||||| | ||||||| ||||||||||| ||| | || |||||||||||| |||| |
|
|
| T |
12160379 |
ctattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattcttttctattgaatcacactacgtatattcctttcagcaa |
12160284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 12159797 - 12159468
Alignment:
| Q |
2 |
ctatgggggtggtggtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcac |
101 |
Q |
| |
|
|||| ||||||||| |||||||||||| | |||||||||||||||| ||||||| |||| || || |||||||| | |||| |||||||||||| || |
|
|
| T |
12159797 |
ctataggggtggtgatttgtagagccatttttaatcttttcccacttatcatcaacgaatgacggtacatttatacctgtattcctttctattgaattac |
12159698 |
T |
|
| Q |
102 |
gctacgtatattcctttcagcaatat---gttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaacctttt |
198 |
Q |
| |
|
||||| | |||||||| ||| | | ||| |||||| ||| ||| ||| || | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12159697 |
gctacatctattcctt-caggtttttcctgttttaatcaccctacttttgtgttctttttctaattttattaatttcatgtgccccactttcaacctttt |
12159599 |
T |
|
| Q |
199 |
atatcagggtcgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccac |
298 |
Q |
| |
|
||| ||| ||||||| ||| ||||||||||| ||||||| |||| |||||| ||||||| | || |||| | ||||||| ||||||||||| ||| |
|
|
| T |
12159598 |
ctattggggatgtggtttgtagtgccacttttaaacttttcctacttttcatcaaggaatcatggtacttttatacctttattcgtttctattgaatcac |
12159499 |
T |
|
| Q |
299 |
gcgacatatattcctttctgcaagtttttcc |
329 |
Q |
| |
|
|| ||||||||| ||||| || |||||||| |
|
|
| T |
12159498 |
gctacatatatttttttctacacgtttttcc |
12159468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 12159987 - 12159682
Alignment:
| Q |
16 |
gtttgtagagccactattaatcttttcccactcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcacgctacgtatattcc |
115 |
Q |
| |
|
||||||| ||| ||| |||||||| | | ||| |||||||||||||||| || |||||||| |||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
12159987 |
gtttgtaaagcaacttttaatcttgtacaacttctcatcaaggaatcacggtacatttatacctttattcctttctatttaatcacgctacatctattcc |
12159888 |
T |
|
| Q |
116 |
tttcagcaat-------atgttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttatatcagggt |
208 |
Q |
| |
|
||| ||| ||||||||| || | |||||||||||| | ||||||||||||||||||| | ||||||||||||||| |||| ||| |||| |
|
|
| T |
12159887 |
tttatgcaggtttttgcatgttctaaccacgctacctttatgtggtttctctaattttattcattttgtttgccccactttcaacattttctataggggt |
12159788 |
T |
|
| Q |
209 |
cgtggtttttagagccacttttaatcttttcccacttctcatcatggaatcacgatatatttaaaattttattcctttctattgaaccacgcgacatata |
308 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||||||| |||||| |||| ||| || ||||| | | ||||||||||||||||| |||| |||| || |
|
|
| T |
12159787 |
ggtgatttgtagagccatttttaatcttttcccacttatcatcaacgaatgacggtacatttatacctgtattcctttctattgaattacgctacatcta |
12159688 |
T |
|
| Q |
309 |
ttcctt |
314 |
Q |
| |
|
|||||| |
|
|
| T |
12159687 |
ttcctt |
12159682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 12153470 - 12153261
Alignment:
| Q |
13 |
gtggtttgtagagccactattaatcttttcccac--tcctcatcaaggaatcacaatatatttatacatttattattttctattgaatcacgctac-gta |
109 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||| | ||||||| | |||||||||| ||||||||||||||| ||||||| |||||||||| | | | |
|
|
| T |
12153470 |
gtggtttttagagacact-ttaatcttttcccacatttctcatcacgaaatcacaatacatttatacatttattcatttctatagaatcacgcttctgca |
12153372 |
T |
|
| Q |
110 |
tattcctttcagcaatatgttctaatcaagttacctttatgtgctatctctaattttattcatttcatgtgccccactttcaaccttttatatcagggtc |
209 |
Q |
| |
|
|| |||| |||||||||||| | |||||||||||| | | |||||||||||||||||| ||| ||||| |||||| ||||| ||| | | |
|
|
| T |
12153371 |
ggtt--tttcc-----atgttctaatcacgctacctttatgtgttttatctaattttattcatttcttgtaccccattttcaatcttttctatgggcgct |
12153279 |
T |
|
| Q |
210 |
gtggtttttagagccact |
227 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12153278 |
gtggtttttagagccact |
12153261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 12159445 - 12159402
Alignment:
| Q |
148 |
atgtgctatctctaattttattcatttcatgtgccccactttca |
191 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
12159445 |
atgtgctttctctaattttattcatttcatgtactccactttca |
12159402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 12154229 - 12154181
Alignment:
| Q |
71 |
tttatacatttattattttctattgaatcacgctacgtatattcctttc |
119 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||| | |||||||||| |
|
|
| T |
12154229 |
tttatacctttactcttttctattgaatcacgctacatctattcctttc |
12154181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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