View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_high_8 (Length: 298)
Name: NF1747_high_8
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38408871 - 38408593
Alignment:
| Q |
1 |
acaaattgtgcaaatagaaaacacacacctgcttgagaaagtcatcatgccaattgtttaatgtatcaaatgttttgtgtatatttacatcatataccaa |
100 |
Q |
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| T |
38408871 |
acaacttgtgcaaatagaaaacacacacctgcttgagaaagtcatcatgccaattgtttaatgtatcaaatgttttgtgtatatttacatcatataccaa |
38408772 |
T |
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| Q |
101 |
aacacaacaatctgcccctctgtaaaatgcagctccaagactatggaatctttcctgtcctgcagtatcccaaatctgccataccattgtaaatttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38408771 |
aacacaacaatctgcccctctgtaaaatgcagctccaagactatggaacctttcctgtcctgcagtatcccaaatctgccataccattgtaaatttttgt |
38408672 |
T |
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| Q |
201 |
tcattctcttacccctaaaaataaaagtgatagcattataatttactcataaataatgaaatttaaaactactcacctg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38408671 |
tcattctcttacccctaaaaataaaagtgatagcattataatttactcataaataatgaaatttaaaactactcacctg |
38408593 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 43947831 - 43947755
Alignment:
| Q |
101 |
aacacaacaatctgcccctctgtaaaatgcagctccaagactatggaatctttcctgtcctgcagtatcccaaatct |
177 |
Q |
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|||||| ||||| |||||||| ||||| ||| |||||||||| |||||||| || ||||| ||||||||||| |||| |
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| T |
43947831 |
aacacagcaatccgcccctctataaaacgcaactccaagactttggaatctctcttgtccagcagtatcccatatct |
43947755 |
T |
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