View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_low_13 (Length: 280)
Name: NF1747_low_13
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 38409127 - 38408878
Alignment:
| Q |
14 |
agacagggatggaactaggatttgaaaaccaattcaattcaattctagttcaatttctgttcaacccaactacaatgtaagggatcaaactaactagttt |
113 |
Q |
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| T |
38409127 |
agacagggatggaactaggatttgaaaaccaattcaattcaattctagttcaatttctgttcaacccaactacaatgtaaaggatcaaactaactagttt |
38409028 |
T |
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| Q |
114 |
ccgtttcaaccggttaagccgttccatttgatccagatgattttaaacatttctcatctctaaactaccatcacttcaattcatttatttaagtatataa |
213 |
Q |
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| T |
38409027 |
ccgtttcaaccggttaagccgttccatttgatccagatgattttaaacatttctcatctctaaactaccatcacttcaattcatttatttaagtatataa |
38408928 |
T |
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| Q |
214 |
gattagcagcaataatcacataacctccagattgtaagccaaacaaaggt |
263 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38408927 |
gattagcaacaataatcacataacctccagattgtaagccaaacaaaggt |
38408878 |
T |
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