View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_low_15 (Length: 256)
Name: NF1747_low_15
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 24187560 - 24187779
Alignment:
| Q |
17 |
cacagattataaactccaacagcaatcagaaagagttaaaagtgatgaagttaatactgtcttcaataa-gaaaataaaactggaagtaaggaatctaaa |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24187560 |
cacacattataaactccaacagcaatcagaaagagttaaaagtgatgaagttaatactgtcttcaataaagaaaataaaactggaagtaaggaatctaaa |
24187659 |
T |
|
| Q |
116 |
accttcaatggtgagaatgcaaaggtaacaacagcattggcagcaaagttggtaagaacagccatactaatcccccggcctctagtgcgaagtgggaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24187660 |
accttcaatggtgagaatgcaaaggtaacaacagcattggcagcaaagttggtaagaacagccatactaatcccccggcctctagtgcgaagtgggaaga |
24187759 |
T |
|
| Q |
216 |
tttcggataccatcagccaa |
235 |
Q |
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|||||||||||||||||||| |
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| T |
24187760 |
tttcggataccatcagccaa |
24187779 |
T |
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