View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_low_16 (Length: 252)
Name: NF1747_low_16
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 43875890 - 43875658
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43875890 |
ctagttttaaaggaataaaa-aacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
43875792 |
T |
|
| Q |
119 |
aaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccat |
218 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
43875791 |
aaaatatttactttacggaatacatggtggtacgacattcaaagtgtaagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccat |
43875692 |
T |
|
| Q |
219 |
cattaccctttagagatttagaggctttagtttt |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
43875691 |
cattaccctttagagatttagaggctttagtttt |
43875658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 36595798 - 36596006
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
118 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
36595798 |
ctagttttaaaggaataaaaaatcagatttagtatgctggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatacta |
36595896 |
T |
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| Q |
119 |
aaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccat |
218 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||| | ||| |||| || ||| |
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| T |
36595897 |
aaaatacttactttacggaatacatggtggtacggcattcaaagtataagcaattaacagaattcgtagcttttcgtagttacattcccgtaccattcat |
36595996 |
T |
|
| Q |
219 |
cattaccctt |
228 |
Q |
| |
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|||||||||| |
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| T |
36595997 |
cattaccctt |
36596006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 48360046 - 48359843
Alignment:
| Q |
23 |
ttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaa |
122 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48360046 |
ttttaaaggaataaaa-aacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaaaa |
48359948 |
T |
|
| Q |
123 |
tatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccatcatt |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
48359947 |
tatttactttacggaatacatggtggtacggcattcaaagtgtaagcaataaacagaattcgtagcttttcgtagttatcatcccgtactatccatcatt |
48359848 |
T |
|
| Q |
223 |
accct |
227 |
Q |
| |
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||||| |
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| T |
48359847 |
accct |
48359843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 13050417 - 13050625
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13050417 |
ctagttttaaaggaataaaa-aacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagtttgacaatcatcacttgaattaatacta |
13050515 |
T |
|
| Q |
119 |
aaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||| ||| ||||||||||| |
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| T |
13050516 |
aaaatatttactttacggaatacatggtggtacggcattcaaagtgtaagcaataaatataattcgtagctttttgtagttaccatcccgtactatccat |
13050615 |
T |
|
| Q |
219 |
cattaccctt |
228 |
Q |
| |
|
|||||||||| |
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| T |
13050616 |
cattaccctt |
13050625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 33506919 - 33507126
Alignment:
| Q |
20 |
tagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506919 |
tagttttaaaggaataaaa-aacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaa |
33507017 |
T |
|
| Q |
120 |
aaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |
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| T |
33507018 |
aaatatttactttacggaatacatggtggtacgacattcaaagtgtaagcaataaacagaattcgtagcttttcgtagttaccatcccgtactatccatc |
33507117 |
T |
|
| Q |
220 |
attaccctt |
228 |
Q |
| |
|
||||||||| |
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| T |
33507118 |
attaccctt |
33507126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 13150491 - 13150700
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
118 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
13150491 |
ctagttttaaaggaataaaaaatcagatttagtatgctggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaa-taatacta |
13150589 |
T |
|
| Q |
119 |
aaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccat |
218 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||| || |||| |||||| |
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|
| T |
13150590 |
aaaatacttactttacagaatacatggtggtacgacattcaaagtgtaagcaattaacagaattcgtagcttttcgtagttaccatctcgtaccatccat |
13150689 |
T |
|
| Q |
219 |
cattacccttt |
229 |
Q |
| |
|
||||||||||| |
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|
| T |
13150690 |
cattacccttt |
13150700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 25943446 - 25943237
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatacta |
118 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25943446 |
ctagttttaaaggaataaaaaatcagatttagtatgccggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat-aatactg |
25943348 |
T |
|
| Q |
119 |
aaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagttatactcctgtactatccat |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||| |||||| |
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|
| T |
25943347 |
aaaatacttactttacggaatacatggtggtacgacattcaaagtgtaagcaattaacagaattcgtagcttttcgtagttaccatcccgtaccatccat |
25943248 |
T |
|
| Q |
219 |
cattacccttt |
229 |
Q |
| |
|
||||||||||| |
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| T |
25943247 |
cattacccttt |
25943237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 13002411 - 13002594
Alignment:
| Q |
19 |
ctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgaca---atcatcacttgaattaata |
115 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
13002411 |
ctagttttaaaggaataaaaaaccagatttagtatgctggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcatcacttgaa-taatg |
13002509 |
T |
|
| Q |
116 |
ctaaaaatatttactttacggaatacatggtggtaaggcattcaaagtgtaagcaataaacagaattcgtagcttttcatagtta |
200 |
Q |
| |
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||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
13002510 |
ctaaaaatacttactttatggaatacatggtggtacgacattcaaagtgtaagcaattaacataattcgtagcttttcgtagtta |
13002594 |
T |
|
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