View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_low_2 (Length: 437)
Name: NF1747_low_2
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 12160434 - 12160849
Alignment:
| Q |
8 |
cgaagaaaattagagaaaacacataaaggaagtgtgattagaacagggaaaagcctacaacaaggaatatatgtagcgtgattcaatagataggaataaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12160434 |
cgaataaaattagagaaaacacataaaggaagcgtgattagaacatggaaaaatctacaacaaggaatatatgtagcgtgattcaatagataggaataaa |
12160533 |
T |
|
| Q |
108 |
ggtataaatgtaccgtaataccatgatgaaaagaggtaaacaattgtagattctgaaagtagctgctgaaactaaaagcatgcgttgatgagaaattact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12160534 |
ggtataaatgtaccgtaataccatgatgaaaagaggtaaacaatcgtagattccgaaagtagctgctgaaactaaaagcatgtgttgatgagaaattact |
12160633 |
T |
|
| Q |
208 |
aatatgggttggtcaaacacttttaaataggtcccacataaagtggtgggtcgatctataacgtgccactataggtggttttatcaaagtacatttttag |
307 |
Q |
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| T |
12160634 |
aatatgggttggtcaaacacttttaaataggtcccacataaaggggtgggtcgatctataacctgtcactataggtggttttataaaagtacatttttag |
12160733 |
T |
|
| Q |
308 |
tggtgggtccctcatctattttatctattgacac--attaaatattatcatgtttttgattttcttcacaacctttggcaaatttgaaacaatctttgac |
405 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12160734 |
tggtgggtccctcatctattttatatattgacacatattaaatattatcatgtttttgattttcttcacaacctttggcaaatttgaaacaatctttgac |
12160833 |
T |
|
| Q |
406 |
cattgtaggctataat |
421 |
Q |
| |
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|||||||||||||||| |
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| T |
12160834 |
cattgtaggctataat |
12160849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 12154262 - 12154429
Alignment:
| Q |
131 |
tgatgaaaagaggtaaacaattgtagattctgaaagtagctgctgaaactaaaagcatgcgttgatgagaaattactaatatgggttggtcaaacacttt |
230 |
Q |
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|||||| |||||| ||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| ||||| ||||||| |||||||||||||| |||| ||| |
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| T |
12154262 |
tgatgagaagagggaaaaaatcgtagattatgagagtagttgctgaaactagaagcatgcgtggatgaaaaattaccaatatgggttggtccaacaattt |
12154361 |
T |
|
| Q |
231 |
taaataggtcccacataaagtggtgggtcgatctataacgtgccactataggtggttttatcaaagta |
298 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| || || |||||||||||| |||||| |
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| T |
12154362 |
taaacaggtcccacataaagtggtgggtccatctataacgtgtcattagaggtggttttatgaaagta |
12154429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 12153510 - 12153620
Alignment:
| Q |
9 |
gaagaaaattagagaaaacacataaaggaagtgtgattagaacagggaaaagcctacaacaaggaatatatgtagcgtgattcaatagataggaataaag |
108 |
Q |
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||||||||||| ||||| |||||||||| || ||||||||||||||||||| ||| || |||||||| |||||||||||||||||||| |||||||||| |
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| T |
12153510 |
gaagaaaattatagaaagcacataaaggtagcgtgattagaacagggaaaaacctgcagaaaggaatagatgtagcgtgattcaatagaaaggaataaag |
12153609 |
T |
|
| Q |
109 |
gtataaatgta |
119 |
Q |
| |
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||||||||||| |
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| T |
12153610 |
gtataaatgta |
12153620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 12159830 - 12159953
Alignment:
| Q |
13 |
aaaattagagaaaacacataaaggaagtgtgattagaacagggaaaagcctacaacaaggaatatatgtagcgtgattcaatagataggaataaaggtat |
112 |
Q |
| |
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||||||||||||| |||||||||| || ||| |||||||| | |||| ||| || |||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
12159830 |
aaaattagagaaaccacataaaggtagcgtggttagaacatgcaaaaacctgcataaaggaatagatgtagcgtgattaaatagaaaggaataaaggtat |
12159929 |
T |
|
| Q |
113 |
aaatgtaccgtaataccatgatga |
136 |
Q |
| |
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||||||||||| || || |||||| |
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| T |
12159930 |
aaatgtaccgtgattccttgatga |
12159953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 12153718 - 12153824
Alignment:
| Q |
13 |
aaaattagagaaaacacataaaggaagtgtgattagaacagggaaaagcctacaacaaggaatatatgtagcgtgattcaatagataggaataaaggtat |
112 |
Q |
| |
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||||||||| ||| |||||||||| |||| ||||||| |||||||| || || ||||| || ||||| ||||||||||||| |||||||||||||| |
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| T |
12153718 |
aaaattagataaagcacataaaggtagtg--attagaatagggaaaaacccgcagaaaggactagatgtaatgtgattcaatagaaaggaataaaggtat |
12153815 |
T |
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| Q |
113 |
aaatgtacc |
121 |
Q |
| |
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||||||||| |
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| T |
12153816 |
aaatgtacc |
12153824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 12154158 - 12154229
Alignment:
| Q |
44 |
attagaacagggaaaagcctacaacaaggaatatatgtagcgtgattcaatagataggaataaaggtataaa |
115 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||| |||||||||||||||||||| | || |||||||||||| |
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|
| T |
12154158 |
attaaaacagggaaaaacctacagaaaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataaa |
12154229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 12159487 - 12159554
Alignment:
| Q |
73 |
aatatatgtagcgtgattcaatagataggaataaaggtataaatgtaccgtaataccatgatgaaaag |
140 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||| ||||| | || || |||||||||| |
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| T |
12159487 |
aatatatgtagcgtgattcaatagaaacgaataaaggtataaaagtaccatgattccttgatgaaaag |
12159554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 12159682 - 12159736
Alignment:
| Q |
69 |
aaggaatatatgtagcgtgattcaatagataggaataaaggtataaatgtaccgt |
123 |
Q |
| |
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|||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
12159682 |
aaggaatagatgtagcgtaattcaatagaaaggaatacaggtataaatgtaccgt |
12159736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12153322 - 12153368
Alignment:
| Q |
13 |
aaaattagagaaaacacataaaggaagtgtgattagaacagggaaaa |
59 |
Q |
| |
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||||||||| |||||||||||||| || |||||||||||| |||||| |
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| T |
12153322 |
aaaattagataaaacacataaaggtagcgtgattagaacatggaaaa |
12153368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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