View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1747_low_3 (Length: 421)

Name: NF1747_low_3
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1747_low_3
NF1747_low_3
[»] chr1 (3 HSPs)
chr1 (1-421)||(2928179-2928594)
chr1 (1-232)||(2310472-2310703)
chr1 (263-321)||(2310927-2310985)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 2928594 - 2928179
Alignment:
Q  1 tatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2928594 tatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgttgaacaggtaacaaagaacttgtggttttatgctatacataggatgc 2928495  T
Q  101 ttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttctttt 200  Q
    ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928494 tt-----atttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttctttt 2928400  T
Q  201 ctgaaccattcattttcatttcattgacagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttat 300  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928399 ctaaaccattcattttcatttcattgatagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttat 2928300  T
Q  301 gctacttattcttccttatagataggttcatgatcagtagccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatcta 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928299 gctacttattcttccttatagataggttcatgatcagtggccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatcta 2928200  T
Q  401 acaatgatctggtatggcttt 421  Q
    ||| |||||||||||||||||    
T  2928199 acagtgatctggtatggcttt 2928179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2310472 - 2310703
Alignment:
Q  1 tatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||    
T  2310472 tatgttggttttcgtgttaattaggttgcgcatgttgttgctcgacactttgctgaaaagataacaaagagcttctggttttatgctatacataggatgc 2310571  T
Q  101 ttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttctttt 200  Q
    || ||||||||||||||||||||| |||||||||  ||| ||||||| || || ||||||||||||| || |||||||| ||||||||||||||||||||    
T  2310572 ttgagatatttgtcaccattgattttgaaaaaagattgtcaccacttatcgatcgactacctttcaatcgtcggtatgactaattcattatctttctttt 2310671  T
Q  201 ctgaaccattcattttcatttcattgacagag 232  Q
    || |||||||||||||||||||||||| ||||    
T  2310672 ctaaaccattcattttcatttcattgatagag 2310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 2310927 - 2310985
Alignment:
Q  263 aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag 321  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  2310927 aaatattttaagaatttatgagcaatggctctgtttatgttaattattcttccttatag 2310985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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