View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1747_low_4 (Length: 406)

Name: NF1747_low_4
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1747_low_4
NF1747_low_4
[»] scaffold0274 (2 HSPs)
scaffold0274 (8-389)||(13897-14278)
scaffold0274 (9-104)||(18351-18446)
[»] chr1 (7 HSPs)
chr1 (8-310)||(41430724-41431026)
chr1 (268-390)||(41430604-41430726)
chr1 (9-101)||(41425526-41425618)
chr1 (34-102)||(41440992-41441060)
chr1 (157-198)||(41440899-41440940)
chr1 (59-104)||(41452274-41452319)
chr1 (166-198)||(41452173-41452205)
[»] chr2 (5 HSPs)
chr2 (8-153)||(33362111-33362255)
chr2 (320-390)||(33368435-33368505)
chr2 (8-103)||(33369185-33369280)
chr2 (215-268)||(33368999-33369052)
chr2 (159-198)||(33369079-33369118)
[»] chr7 (2 HSPs)
chr7 (51-150)||(7764085-7764183)
chr7 (214-271)||(7764270-7764327)


Alignment Details
Target: scaffold0274 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 13897 - 14278
Alignment:
Q  8 catcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataa 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13897 catcatcatcattgtcgccgtcatcaatgtcaatcacatcatggacaatggactgcaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataa 13996  T
Q  108 gaatttcagaaacaactataaaacagagataaaataaaatggaactcacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctc 207  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13997 gaatttcagaaacaactataaaacagagttaaaataaaatgaaacttacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctc 14096  T
Q  208 caagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14097 caagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagtt 14196  T
Q  308 cctctacagttgcagttgcagccatgatccttaattagggtagatgctagtatgctaccgcaattgtgatcgcggctgcata 389  Q
    |||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14197 cctgcacagttgcagttgcagccatgatccttaattagggttgatgctagtatgctaccgcaattgtgatcgcggctgcata 14278  T

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Target: scaffold0274; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 18351 - 18446
Alignment:
Q  9 atcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 104  Q
    |||||||||||||||||||   | |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18351 atcatcatcattgtcgccgctgttaatgtcaatcacatcatggacaatggactacaaaagtaacaaataatgattatttgtttgtaaagaaaaaga 18446  T

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Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 41431026 - 41430724
Alignment:
Q  8 catcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataa 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41431026 catcatcatcattgtcgccgtcatcaatgtcaatcacatcatggacaatggactacaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataa 41430927  T
Q  108 gaatttcagaaacaactataaaacagagataaaataaaatggaactcacagccccttatttctaaaggtaccagtagcttcataacaacaaggaaacctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41430926 gaatttcagaaacaactataaaacagagataaaataaaatggaacttatagccccttattactaaaggtaccagtagcttcataacaacaaggaaacctc 41430827  T
Q  208 caagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatataccttaaccagggttgatgccactacaattgcggtctagtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |||| ||||||||||  ||||||||    
T  41430826 caagttcaatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatactttaattagggttaatgctactacaattgtagtctagtt 41430727  T
Q  308 cct 310  Q
    |||    
T  41430726 cct 41430724  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 41430726 - 41430604
Alignment:
Q  268 ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggtagatgctagtatgctaccg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41430726 ccttaaccagggttgatgccactacaattgcggtctagttcctctacagttgcagttgcagccatgatccttaattagggttgatgctagtatgctaccg 41430627  T
Q  368 caattgtgatcgcggctgcatac 390  Q
    |||||||||||||||||||||||    
T  41430626 caattgtgatcgcggctgcatac 41430604  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 41425618 - 41425526
Alignment:
Q  9 atcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaa 101  Q
    |||||||||||||||||||   | |||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  41425618 atcatcatcattgtcgccgctgttaatgtcaatcacatcatggacaatggactacaaaagtaacaaataatgatcatttgtttgtaaagaaaa 41425526  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 41441060 - 41440992
Alignment:
Q  34 atgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaa 102  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  41441060 atgtcaatcacatcatggacaatggactacagaagtaacaaacaatgattatttgttggtacagaaaaa 41440992  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 41440940 - 41440899
Alignment:
Q  157 agccccttatttctaaaggtaccagtagcttcataacaacaa 198  Q
    |||||||  |||||||||||| ||||||||||||||||||||    
T  41440940 agcccctagtttctaaaggtatcagtagcttcataacaacaa 41440899  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 41452319 - 41452274
Alignment:
Q  59 actacaagagtaacaaacaatgattatttgtttgtaaagaaaaaga 104  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||    
T  41452319 actacaaaagtaacaaacaatgattatttgttggtaagaaaaaaga 41452274  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 41452205 - 41452173
Alignment:
Q  166 tttctaaaggtaccagtagcttcataacaacaa 198  Q
    |||||||||||||| ||||||||||||||||||    
T  41452205 tttctaaaggtaccggtagcttcataacaacaa 41452173  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 33362255 - 33362111
Alignment:
Q  8 catcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataa 107  Q
    ||||||||||||||||| |||| || ||||||||  ||||||||||||||| |||||| || ||||||||| ||||||||||| ||||||||||| || |    
T  33362255 catcatcatcattgtcgtcgtcgtcgatgtcaattacatcatggacaatgggctacaacagaaacaaacaaagattatttgttggtaaagaaaaacat-a 33362157  T
Q  108 gaatttcagaaacaactataaaacagagataaaataaaatggaact 153  Q
    || ||||| ||| |  | ||||||| ||||||||||||||||||||    
T  33362156 gactttcaaaaatatttttaaaacatagataaaataaaatggaact 33362111  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 33368505 - 33368435
Alignment:
Q  320 cagttgcagccatgatccttaattagggtagatgctagtatgctaccgcaattgtgatcgcggctgcatac 390  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33368505 cagtcgcagccatgatccttaattagggttgatgctagtatgctaccgcaattgtgatcgcggctgcatac 33368435  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 33369280 - 33369185
Alignment:
Q  8 catcatcatcattgtcgccgtcatcaatgtcaatcgcatcatggacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaag 103  Q
    ||||||||||||  || || ||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  33369280 catcatcatcatcctcaccatcatcaatgtcaatcacatcaaggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaag 33369185  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 33369052 - 33368999
Alignment:
Q  215 aatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatac 268  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  33369052 aatcccttctatttcgaaaaccaaaacaaacatcctcaaactgtaaaactatac 33368999  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 33369118 - 33369079
Alignment:
Q  159 ccccttatttctaaaggtaccagtagcttcataacaacaa 198  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33369118 ccccttatttctaaaggtaccaatagcttcataacaacaa 33369079  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 7764085 - 7764183
Alignment:
Q  51 gacaatggactacaagagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgga 150  Q
    ||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||  ||| ||| ||||||   ||||||||| |||||||||||||||||    
T  7764085 gacaacggactacaaaagtaacaaacaacgattacttgttggtaaagaaaaaga-cagacttttagaaacgtttataaaacatagataaaataaaatgga 7764183  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 7764270 - 7764327
Alignment:
Q  214 caatcccctctacttcgaaaaccaaaacaaacctcctcaaactgtaaaaatatacctt 271  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  7764270 caatcctctctatttcgaaaaccaaaacaaacatccttaaactttaaaactatacctt 7764327  T

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