View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1747_low_7 (Length: 328)
Name: NF1747_low_7
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1747_low_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 39081950 - 39082258
Alignment:
| Q |
20 |
tagcagaatgtgctattgggttcggtagacgtgcaattggaggtaaagacggaaaatattacatggtcattgactcaagtgatgaccctgtgaatcctaa |
119 |
Q |
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| T |
39081950 |
tagcagaatgtgctattgggttcggtagacgtgcaattggaggtaaagatggaaaatattacatggtcattgactcaagtgatgaccctgtgaatcctaa |
39082049 |
T |
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| Q |
120 |
gccaggaacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaac |
219 |
Q |
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| T |
39082050 |
gccaggaacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaat |
39082149 |
T |
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| Q |
220 |
tctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatac |
319 |
Q |
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| T |
39082150 |
tctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatac |
39082249 |
T |
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| Q |
320 |
acattcatc |
328 |
Q |
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| T |
39082250 |
acattcatc |
39082258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 280
Target Start/End: Original strand, 39075588 - 39075761
Alignment:
| Q |
107 |
ctgtgaatcctaagccaggaacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatgga |
206 |
Q |
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| T |
39075588 |
ctgtgaatccaaagccaggaacattaagatatggtgttattcaagaagaaccattgtggataatcttcaagcgtgacatggttattaagcttaaacaaga |
39075687 |
T |
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| Q |
207 |
tcttctcatgaactctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtatta |
280 |
Q |
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| T |
39075688 |
gctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
39075761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 34288724 - 34288693
Alignment:
| Q |
214 |
atgaactctttcaaaacaattgatggtagagg |
245 |
Q |
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| T |
34288724 |
atgaactctttcaaaacaattgatggtagagg |
34288693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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