View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1747_low_8 (Length: 326)

Name: NF1747_low_8
Description: NF1747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1747_low_8
NF1747_low_8
[»] chr3 (15 HSPs)
chr3 (18-294)||(9112055-9112331)
chr3 (110-234)||(8755589-8755713)
chr3 (104-237)||(8746959-8747092)
chr3 (104-237)||(9101233-9101366)
chr3 (110-237)||(9015428-9015555)
chr3 (116-234)||(9108802-9108920)
chr3 (104-237)||(9023455-9023588)
chr3 (104-237)||(9029118-9029251)
chr3 (104-237)||(9034625-9034758)
chr3 (110-237)||(9019293-9019420)
chr3 (100-237)||(8962566-8962703)
chr3 (97-237)||(8965281-8965421)
chr3 (121-237)||(8957126-8957242)
chr3 (141-237)||(9026159-9026255)
chr3 (97-240)||(8988347-8988490)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 9112331 - 9112055
Alignment:
Q  18 acaaagattataaaatccttcatatttttctttaacacctacaataatattccacaataaatttagtggaaccgtcttgttctcaatgcttaaagatagc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9112331 acaaagataataaaatccttcatatttttctttaacacctacaataatattccacaataaatttagtggaaccgtcttgttctcaatgcttaaagatagc 9112232  T
Q  118 aagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagccaacgaggga 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9112231 aagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgaggga 9112132  T
Q  218 ctgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcattgtggtagc 294  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  9112131 ctgaggtcttgggccgagactacattgacggctaagacgacaacaaaaaggaaggaaaggatcttcattgtggtagc 9112055  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 8755713 - 8755589
Alignment:
Q  110 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagcca 209  Q
    ||||| || ||||| ||||| | |||| ||||||| |||||||| ||||||||||||| |||||||||||| |||| ||||||  |||||||||||||||    
T  8755713 aagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggtgccggagcca 8755614  T
Q  210 acgagggactgaggtcttgagccga 234  Q
    |||||||||||||||||||||||||    
T  8755613 acgagggactgaggtcttgagccga 8755589  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 8747092 - 8746959
Alignment:
Q  104 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccg 203  Q
    ||||| ||||| || |||||||||||||||||  || |||| |||||||||||||||||||||| ||||||| |||||||   ||||||  ||||||| |    
T  8747092 tgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacctggtgctg 8746993  T
Q  204 gagccaacgagggactgaggtcttgagccgaggc 237  Q
    ||||||||||||||||||||||||| || |||||    
T  8746992 gagccaacgagggactgaggtcttgggcagaggc 8746959  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 9101366 - 9101233
Alignment:
Q  104 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccg 203  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||||| |||||| ||| ||||||||||| | ||||||  ||||||| |    
T  9101366 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcagggcctggtgctg 9101267  T
Q  204 gagccaacgagggactgaggtcttgagccgaggc 237  Q
    ||||||||||||||||||||| ||| || |||||    
T  9101266 gagccaacgagggactgaggttttgggcagaggc 9101233  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 9015555 - 9015428
Alignment:
Q  110 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagcca 209  Q
    ||||| || ||||||||||| |||||  || |||| | ||||| |||||||||||||| | ||||||| ||||||| ||||||  |||||||||||| ||    
T  9015555 aagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagaca 9015456  T
Q  210 acgagggactgaggtcttgagccgaggc 237  Q
    ||||||| ||||||||||||||||||||    
T  9015455 acgaggggctgaggtcttgagccgaggc 9015428  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 9108920 - 9108802
Alignment:
Q  116 gcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagccaacgagg 215  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||||| |||||| |||||| |||||||||  ||||||  ||| ||| |||||||| ||||    
T  9108920 gcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 9108821  T
Q  216 gactgaggtcttgagccga 234  Q
    |||||||||||||||||||    
T  9108820 gactgaggtcttgagccga 9108802  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 9023588 - 9023455
Alignment:
Q  104 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccg 203  Q
    ||||| ||||| || ||||||||||| |||| | ||  ||| | ||||||||||||| |||||| ||||||||||||||| | ||||||  |||||||||    
T  9023588 tgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcaggacctggtgccg 9023489  T
Q  204 gagccaacgagggactgaggtcttgagccgaggc 237  Q
    |||||||||||||||| |||||||| || |||||    
T  9023488 gagccaacgagggactaaggtcttgggcagaggc 9023455  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 9029251 - 9029118
Alignment:
Q  104 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccg 203  Q
    ||||| ||||| || |||||||||||||||||  || |||| ||||||||| ||||| |||||| ||||||||||||||| | ||||||  ||||||| |    
T  9029251 tgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcaggacctggtgctg 9029152  T
Q  204 gagccaacgagggactgaggtcttgagccgaggc 237  Q
    |||||||||| ||||| |||||||| || |||||    
T  9029151 gagccaacgaaggactaaggtcttgggcagaggc 9029118  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 9034758 - 9034625
Alignment:
Q  104 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccg 203  Q
    ||||| ||||| || |||||||||||||||||  || |||| ||||||||||| ||| ||| || ||||||||||||||| | ||||||  |||||||||    
T  9034758 tgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcaggacctggtgccg 9034659  T
Q  204 gagccaacgagggactgaggtcttgagccgaggc 237  Q
    |||||||||| ||||| |||||||| || |||||    
T  9034658 gagccaacgaaggactaaggtcttgggcagaggc 9034625  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 9019420 - 9019293
Alignment:
Q  110 aagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagcca 209  Q
    ||||| ||||||||||||||||||||  ||||||| |||||||| |||||| | |||| |||||||  ||| ||   ||||||  |||||||||||||      
T  9019420 aagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcgg 9019321  T
Q  210 acgagggactgaggtcttgagccgaggc 237  Q
    | |||||||| |||||||||||||||||    
T  9019320 atgagggactaaggtcttgagccgaggc 9019293  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 8962703 - 8962566
Alignment:
Q  100 tcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggt 199  Q
    ||||| ||| |||||||| |||||||| | ||||||  ||||||| ||||||||||| |||  || || |||||| ||| |||| | ||||||  |||||    
T  8962703 tcaattcttgaagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggt 8962604  T
Q  200 gccggagccaacgagggactgaggtcttgagccgaggc 237  Q
    || ||||| ||||||||||| |||||||| ||||||||    
T  8962603 gctggagctaacgagggactaaggtcttgggccgaggc 8962566  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 8965421 - 8965281
Alignment:
Q  97 ttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgct 196  Q
    |||||| | ||| ||||| || |||||||||| ||||||  ||||||| ||||| ||||  ||| |||||| |||||| |||||||| |  |||||   |    
T  8965421 ttctcagttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggactt 8965322  T
Q  197 ggtgccggagccaacgagggactgaggtcttgagccgaggc 237  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||    
T  8965321 ggtgctggagccaacgacggactaaggtcttgggccgaggc 8965281  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 8957242 - 8957126
Alignment:
Q  121 cattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagccaacgagggactg 220  Q
    |||||||| ||||||  ||||||| ||||||||||| ||| |||||| | |||| |||||||| |  |||||  | ||||| ||||| ||||| |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  221 aggtcttgagccgaggc 237  Q
    |||||||| ||||||||    
T  8957142 aggtcttgggccgaggc 8957126  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 9026255 - 9026159
Alignment:
Q  141 ctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc 237  Q
    |||| ||||| ||||||||| |||||| |||||||||| |||| | |||||   ||||||| ||||||||||| ||||| || ||||| || |||||    
T  9026255 ctccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggc 9026159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 8988490 - 8988347
Alignment:
Q  97 ttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactgaatttgtaagagatccagcagctccggtatcaggtgct 196  Q
    |||||| | ||| |||||||| ||||||||||  || ||  ||||||| |||||||||||  || |||||  ||| |  ||||||||    |||||  ||    
T  8988490 ttctcagttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacct 8988391  T
Q  197 ggtgccggagccaacgagggactgaggtcttgagccgaggctac 240  Q
    ||||| |||| |||||||||||| |||||||| |||||||||||    
T  8988390 ggtgctggagacaacgagggactaaggtcttgggccgaggctac 8988347  T

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