View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17480_high_2 (Length: 562)

Name: NF17480_high_2
Description: NF17480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17480_high_2
NF17480_high_2
[»] chr4 (2 HSPs)
chr4 (13-144)||(26897314-26897445)
chr4 (13-144)||(26901776-26901907)
[»] chr5 (2 HSPs)
chr5 (13-144)||(27205727-27205859)
chr5 (13-144)||(27210192-27210324)
[»] chr8 (3 HSPs)
chr8 (13-126)||(24859179-24859292)
chr8 (478-562)||(24859076-24859160)
chr8 (478-561)||(24860109-24860192)
[»] chr3 (8 HSPs)
chr3 (13-144)||(24047105-24047237)
chr3 (13-144)||(23674829-23674961)
chr3 (13-144)||(23679334-23679466)
chr3 (13-144)||(24051571-24051703)
chr3 (478-562)||(21966923-21967007)
chr3 (478-562)||(21989359-21989443)
chr3 (518-554)||(21966708-21966744)
chr3 (518-554)||(21989144-21989180)
[»] chr1 (2 HSPs)
chr1 (13-144)||(26406715-26406847)
chr1 (13-144)||(26411181-26411313)
[»] chr6 (3 HSPs)
chr6 (478-562)||(20487144-20487228)
chr6 (478-554)||(20481783-20481859)
chr6 (149-194)||(20486853-20486898)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 26897314 - 26897445
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897314 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26897413  T
Q  113 acatactgctttcttcaacttagcattacaaa 144  Q
    ||||||||||| ||||||||||||||||||||    
T  26897414 acatactgcttacttcaacttagcattacaaa 26897445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 26901776 - 26901907
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901776 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26901875  T
Q  113 acatactgctttcttcaacttagcattacaaa 144  Q
    ||||||||||| ||||||||||||||||||||    
T  26901876 acatactgcttacttcaacttagcattacaaa 26901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 27205727 - 27205859
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205727 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27205826  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  27205827 acatactgcttacgttcaacttagcattacaaa 27205859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 27210192 - 27210324
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210192 attatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27210291  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||| ||| | |||||||||||||||||||    
T  27210292 acatactacttacgttcaacttagcattacaaa 27210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 24859292 - 24859179
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859292 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 24859193  T
Q  113 acatactgctttct 126  Q
     |||||||||||||    
T  24859192 gcatactgctttct 24859179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 478 - 562
Target Start/End: Complemental strand, 24859160 - 24859076
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagacttaacatttct 562  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  24859160 aaaagatcaacttatgccacctcaaacccttttctccaactcattagcgccacatcagcgcccatgtgtgagacttaacatttct 24859076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 561
Target Start/End: Original strand, 24860109 - 24860192
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagacttaacatttc 561  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  24860109 aaaaaatcaacttatgccacctcagacccttatctccaacccataagcgccacatcagcgaccatatgtgagacttaacgtttc 24860192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 24047237 - 24047105
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24047237 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24047138  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  24047137 acatactgcttactttcaacttagcattacaaa 24047105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 23674961 - 23674829
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23674961 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23674862  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  23674861 acatactgcttactttcaacttagcattacaaa 23674829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 23679466 - 23679334
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23679466 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23679367  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  23679366 acatactgcttactttcaacttagcattacaaa 23679334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 24051703 - 24051571
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24051703 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24051604  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  24051603 acatactgcttactttcaacttagcattacaaa 24051571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 21966923 - 21967007
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagacttaacatttct 562  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  21966923 aaaagatcaacttatgccacctcagacccttatctccaacccataagcgccacatcagcgaccatgtgtgagacttaacgtttct 21967007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 21989359 - 21989443
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagacttaacatttct 562  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  21989359 aaaagatcaacttatgccacctcagacccttatctccaacccataagcgccacatcagcgaccatgtgtgagacttaacgtttct 21989443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 21966744 - 21966708
Alignment:
Q  518 ccataagcgccacatcagcgcccatgtgtgagactta 554  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21966744 ccataagcgccacatcagcgaccatgtgtgagactta 21966708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 21989180 - 21989144
Alignment:
Q  518 ccataagcgccacatcagcgcccatgtgtgagactta 554  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21989180 ccataagcgccacatcagcgaccatgtgtgagactta 21989144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 26406847 - 26406715
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26406847 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26406748  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  26406747 acatactgcttactttcaacttagcattacaaa 26406715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 26411313 - 26411181
Alignment:
Q  13 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 112  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26411313 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26411214  T
Q  113 acatactgctttc-ttcaacttagcattacaaa 144  Q
    ||||||||||| | |||||||||||||||||||    
T  26411213 acatactgcttactttcaacttagcattacaaa 26411181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 20487144 - 20487228
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagacttaacatttct 562  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  20487144 aaaagatcaacttatgccacctcatacccttatctccaacccataagcgccacatcagcgaccatgtgtgagacttaacgtttct 20487228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 554
Target Start/End: Complemental strand, 20481859 - 20481783
Alignment:
Q  478 aaaagatcaacttatgccacctcagacccttttctccaacccataagcgccacatcagcgcccatgtgtgagactta 554  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  20481859 aaaaaatcaacttatgccacctcagacccttatctccaacccataagcgccacatcagcaaccatgtgtgagactta 20481783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 20486853 - 20486898
Alignment:
Q  149 tgacaaagcaatggcctacaagaataagaagaacaacaaacctgat 194  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||    
T  20486853 tgacgaagcaatggcctaaaataataataagaacaacaaacctgat 20486898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University