View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17480_low_1 (Length: 946)
Name: NF17480_low_1
Description: NF17480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17480_low_1 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 895; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 895; E-Value: 0
Query Start/End: Original strand, 19 - 941
Target Start/End: Complemental strand, 8317316 - 8316394
Alignment:
| Q |
19 |
gtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcataataaaattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8317316 |
gtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcattataaaattc |
8317217 |
T |
|
| Q |
119 |
aatgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317216 |
aatgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaaga |
8317117 |
T |
|
| Q |
219 |
agtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317116 |
agtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgc |
8317017 |
T |
|
| Q |
319 |
tgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggag |
418 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8317016 |
tgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaaggggag |
8316917 |
T |
|
| Q |
419 |
ctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316916 |
ctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatc |
8316817 |
T |
|
| Q |
519 |
agtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattcta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316816 |
agtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattcta |
8316717 |
T |
|
| Q |
619 |
ttttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaacatgacaccttggaca |
718 |
Q |
| |
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| T |
8316716 |
ttttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaacatgacaccttggaca |
8316617 |
T |
|
| Q |
719 |
tacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaac |
818 |
Q |
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| T |
8316616 |
tacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaac |
8316517 |
T |
|
| Q |
819 |
taaccttatcatagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgag |
918 |
Q |
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| T |
8316516 |
taaccttatcatagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgag |
8316417 |
T |
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| Q |
919 |
cttggtaatggatgatgtccatc |
941 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
8316416 |
cttggtgatggatgatgtccatc |
8316394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
122 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
207 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 121 - 498
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
121 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
220 |
Q |
| |
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|||||||| ||||||||||| |||||||||| | |||| || ||||| || ||||||| |||| ||| |||||| |||| ||||||||| | | ||| |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
|
| Q |
221 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
320 |
Q |
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|||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| ||||| | |||||| ||| |||||||| ||| | | |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
|
| Q |
321 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
420 |
Q |
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|||||||||||||| ||| |||| | || ||| |||| ||||| || || | || ||||||||||| ||||||| || ||||||| |||| | |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
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| Q |
421 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
498 |
Q |
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||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
183 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
282 |
Q |
| |
|
||||||| |||||| |||| ||||||||| ||| ||| |||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| | |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
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| Q |
283 |
tgaggagttttaggtgtccaaaatgaa |
309 |
Q |
| |
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|||||| ||| || ||| |||||||| |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
465 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
538 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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