View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17480_low_3 (Length: 349)
Name: NF17480_low_3
Description: NF17480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17480_low_3 |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 159 - 331
Target Start/End: Original strand, 32731653 - 32731828
Alignment:
| Q |
159 |
caatatgactaaaagtgaaaccgaacatatgctccaccttcacaactctttgaagaagaaaatgaatctgtcctaattaaaa--gtgaagacaaaa-att |
255 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
32731653 |
caatatgactaaaagtgaaaccaaacatatgctccaccttcacaactctttgaagaagaaaatgaatctgtcctaactaaaaaagtgaagacaaaaaatt |
32731752 |
T |
|
| Q |
256 |
atggtaatttaaaacgtgcccatagtaaataaataccagtagtagtttattgtctaagcagaatccaatacatttt |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32731753 |
atggtaatttaaaacgtgcccatagtaaataaataccagtagtagtttattgtctaagcagaatccaatacatttt |
32731828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 24860177 - 24860327
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
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||||||||||| |||| |||||| ||||||| ||||| ||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
24860177 |
tgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagtctaaaaataattaaggga |
24860276 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24860277 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
24860327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 24859092 - 24858944
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
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||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
24859092 |
tgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaatgaacctaaaaataattaaggga |
24858993 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
150 |
Q |
| |
|
||||||||||||||| ||||||||||| || | ||||||||||||||||| |
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|
| T |
24858992 |
ccaaaacgaattttgataattatttaa-ggcctagatatataattaagcc |
24858944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 21966716 - 21966567
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
21966716 |
tgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaagga |
21966618 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21966617 |
ccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct |
21966567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 21989152 - 21989003
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
21989152 |
tgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaagga |
21989054 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21989053 |
ccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct |
21989003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 21966991 - 21967141
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21966991 |
tgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaaggga |
21967090 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21967091 |
ccaaaatgaatattggtaattatttgagggaccagatatataattaagcct |
21967141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 21989427 - 21989577
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21989427 |
tgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaaggga |
21989526 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21989527 |
ccaaaatgaatattggtaattatttgagggaccagatatataattaagcct |
21989577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 20487212 - 20487361
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20487212 |
tgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggaccaaaatgagactaaaattaattaaggga |
20487311 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20487312 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
20487361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 20481791 - 20481641
Alignment:
| Q |
1 |
tgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaggga |
100 |
Q |
| |
|
||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
20481791 |
tgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgagactaaaattaaataaggga |
20481692 |
T |
|
| Q |
101 |
ccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20481691 |
ccaaaccgaattttggtaattatttaagggaccagatatataattaagcct |
20481641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 22970177 - 22970091
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
150 |
Q |
| |
|
||||||||||||| || | | ||||||||| | ||| ||||| ||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
22970177 |
ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc |
22970091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 23818217 - 23818303
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
150 |
Q |
| |
|
||||||||||||| || | | ||||||||| | ||| ||||| ||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
23818217 |
ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc |
23818303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 8000 - 8063
Alignment:
| Q |
88 |
attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
8000 |
attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcct |
8063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 18993697 - 18993634
Alignment:
| Q |
88 |
attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
18993697 |
attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcct |
18993634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 11384278 - 11384191
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| | | ||||||||| ||| | | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
11384278 |
ttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcct |
11384191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 44491805 - 44491718
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
||||||||||||||||| | ||||||||| | ||||||||| ||| | | |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
44491805 |
ttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct |
44491718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 48678058 - 48678145
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
151 |
Q |
| |
|
||||| |||||||||| | | ||||||||| ||||||||||| |||| | | ||||||||||||| |||| |||||||| |||||| |
|
|
| T |
48678058 |
ttaaatgaccaaaatggagcgaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcct |
48678145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 28240793 - 28240879
Alignment:
| Q |
64 |
ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc |
150 |
Q |
| |
|
|||||||||||||||| || ||||||||| | ||||||||| || ||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
28240793 |
ttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc |
28240879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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