View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17480_low_4 (Length: 328)
Name: NF17480_low_4
Description: NF17480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17480_low_4 |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 138 - 310
Target Start/End: Original strand, 32731653 - 32731828
Alignment:
| Q |
138 |
caatatgactaaaagtgaaaccgaacatatgctccaccttcacaactctttgaagaagaaaatgaatctgtcctaattaaaa--gtgaagacaaaa-att |
234 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
32731653 |
caatatgactaaaagtgaaaccaaacatatgctccaccttcacaactctttgaagaagaaaatgaatctgtcctaactaaaaaagtgaagacaaaaaatt |
32731752 |
T |
|
| Q |
235 |
atggtaatttaaaacgtgcccatagtaaataaataccagtagtagtttattgtctaagcagaatccaatacatttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32731753 |
atggtaatttaaaacgtgcccatagtaaataaataccagtagtagtttattgtctaagcagaatccaatacatttt |
32731828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 24860207 - 24860327
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24860207 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
24860306 |
T |
|
| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24860307 |
accagatatataattaagcct |
24860327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 24859071 - 24858944
Alignment:
| Q |
1 |
aaatttttaacggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaatt |
100 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
24859071 |
aaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaatgaacctaaaaataattaagggaccaaaacgaattttgataatt |
24858972 |
T |
|
| Q |
101 |
atttaagggaccagatatataattaagcc |
129 |
Q |
| |
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|||||| || | ||||||||||||||||| |
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| T |
24858971 |
atttaa-ggcctagatatataattaagcc |
24858944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 20487242 - 20487361
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20487242 |
acggaaaggacataaacgatggacggatcttaattaaaggaccaaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaaggg |
20487341 |
T |
|
| Q |
110 |
accagatatataattaagcc |
129 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
20487342 |
accagatatataattaagcc |
20487361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 20481761 - 20481641
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||| |
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| T |
20481761 |
acggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaaggg |
20481662 |
T |
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| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20481661 |
accagatatataattaagcct |
20481641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 21966687 - 21966567
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21966687 |
acggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaaggg |
21966588 |
T |
|
| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
21966587 |
accaaatatataattaagcct |
21966567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 21989123 - 21989003
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21989123 |
acggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaaggg |
21989024 |
T |
|
| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
21989023 |
accaaatatataattaagcct |
21989003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 21967021 - 21967141
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||| || ||| ||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
21967021 |
acggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgaggg |
21967120 |
T |
|
| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
21967121 |
accagatatataattaagcct |
21967141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 21989457 - 21989577
Alignment:
| Q |
10 |
acggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaaggg |
109 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||| || ||| ||||||||||||||||| |||| ||||||||||||| |||| |
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|
| T |
21989457 |
acggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgaggg |
21989556 |
T |
|
| Q |
110 |
accagatatataattaagcct |
130 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
21989557 |
accagatatataattaagcct |
21989577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 44491805 - 44491718
Alignment:
| Q |
43 |
ttaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
130 |
Q |
| |
|
|||||||||||||||||| | |||| |||| | ||||||||| ||| | | |||||||||||||||||| ||| ||||||||||| |
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|
| T |
44491805 |
ttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct |
44491718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 28240772 - 28240879
Alignment:
| Q |
22 |
taaacgatggacggagcttaattaaaggaccaaaatgagcctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatata |
121 |
Q |
| |
|
|||| ||||||||||| | | |||||||||||||||| | | |||| |||| | ||||||||| || ||| |||||||||||||||||| ||| || |
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| T |
28240772 |
taaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgta |
28240871 |
T |
|
| Q |
122 |
attaagcc |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
28240872 |
attaagcc |
28240879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 8002 - 8063
Alignment:
| Q |
69 |
taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
130 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
8002 |
taattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcct |
8063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 18993695 - 18993634
Alignment:
| Q |
69 |
taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct |
130 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||||| | || ||||||||||| |
|
|
| T |
18993695 |
taattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcct |
18993634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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