View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17480_low_5 (Length: 294)

Name: NF17480_low_5
Description: NF17480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17480_low_5
NF17480_low_5
[»] chr5 (5 HSPs)
chr5 (45-294)||(33807966-33808213)
chr5 (45-294)||(33811620-33811867)
chr5 (45-294)||(33816538-33816785)
chr5 (128-223)||(16698504-16698601)
chr5 (128-223)||(22763905-22764002)
[»] chr3 (8 HSPs)
chr3 (44-294)||(50603152-50603404)
chr3 (45-294)||(54967210-54967476)
chr3 (45-242)||(44782524-44782733)
chr3 (128-294)||(39298737-39298908)
chr3 (126-242)||(18556392-18556511)
chr3 (128-242)||(54979933-54980051)
chr3 (197-286)||(31725346-31725433)
chr3 (124-223)||(17645800-17645897)
[»] chr6 (6 HSPs)
chr6 (44-294)||(31151925-31152176)
chr6 (128-242)||(22981504-22981621)
chr6 (128-242)||(23806787-23806904)
chr6 (121-266)||(1111378-1111524)
chr6 (43-110)||(22981647-22981712)
chr6 (43-110)||(23806696-23806761)
[»] chr1 (2 HSPs)
chr1 (44-260)||(29706853-29707069)
chr1 (128-220)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (63-294)||(26516-26751)
[»] chr7 (11 HSPs)
chr7 (45-223)||(25857131-25857317)
chr7 (45-242)||(4842648-4842857)
chr7 (126-242)||(13465046-13465165)
chr7 (45-294)||(4835575-4835839)
chr7 (128-223)||(27341025-27341120)
chr7 (119-240)||(17845847-17845969)
chr7 (128-242)||(24379370-24379487)
chr7 (136-294)||(8252686-8252842)
chr7 (44-95)||(24380113-24380164)
chr7 (128-194)||(38994151-38994218)
chr7 (63-115)||(24379297-24379347)
[»] chr8 (5 HSPs)
chr8 (44-294)||(41481549-41481816)
chr8 (45-251)||(36167596-36167813)
chr8 (128-239)||(18951211-18951326)
chr8 (50-108)||(18951129-18951185)
chr8 (84-133)||(31206636-31206685)
[»] scaffold0479 (1 HSPs)
scaffold0479 (45-242)||(2727-2936)
[»] chr4 (3 HSPs)
chr4 (45-251)||(9757212-9757431)
chr4 (126-223)||(37286972-37287069)
chr4 (128-240)||(42682924-42683038)
[»] chr2 (1 HSPs)
chr2 (130-223)||(37037942-37038035)
[»] scaffold0003 (2 HSPs)
scaffold0003 (128-223)||(342306-342404)
scaffold0003 (45-97)||(342217-342269)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 33808213 - 33807966
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 144  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33808116  T
Q  145 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 244  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808115 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33808016  T
Q  245 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808015 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 33807966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 33811867 - 33811620
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 144  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33811770  T
Q  145 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 244  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811769 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33811670  T
Q  245 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811669 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 33811620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 33816785 - 33816538
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 144  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33816688  T
Q  145 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 244  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816687 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33816588  T
Q  245 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816587 taactatgtatctcaatttgtagatacaactctcacaaattggctcacta 33816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 223  Q
    |||||||| ||||||| ||||||||||||||| || |||||||  | ||||||| |   ||||||||| | ||||||||||| |||||||||||||||    
T  16698601 aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa 16698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 223  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||  |  |||||||||| | |   ||||||| |||||||||||||||    
T  22763905 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa 22764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 44 - 294
Target Start/End: Complemental strand, 50603404 - 50603152
Alignment:
Q  44 ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 143  Q
    |||||||||||||||||   |||||| |||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  50603404 ttgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaa 50603305  T
Q  144 accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 243  Q
    |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||    
T  50603304 accttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggac 50603205  T
Q  244 ctaactatgtatctcaatttgtagatacaactctc--acaaattggctcacta 294  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  50603204 ctaactatatatctcaatttgtagatacaactctcatacaaattggctcacta 50603152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 54967210 - 54967476
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||| || ||||||||||||||||| |||| ||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt 54967306  T
Q  134 agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc 229  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||    
T  54967307 agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 54967406  T
Q  230 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  ||||||||||||||||||||||    
T  54967407 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcacta 54967476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 44782620  T
Q  134 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 229  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  44782621 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc 44782720  T
Q  230 accctcaggtgga 242  Q
    ||||| |||||||    
T  44782721 acccttaggtgga 44782733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 39298908 - 39298737
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc 226  Q
    |||||||| ||| ||||||||||||||||||  ||||||||| |||||||||| |  ||||||||||  ||||||||||| |||| |||||||||| | |    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac 39298809  T
Q  227 ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    |||||||| ||||||| |||||     ||| | ||||||||||||   || ||||||||||||||||||||||    
T  39298808 ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcacta 39298737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
Q  126 aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 223  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||   |||||||||||  ||||||||||| | |||| ||||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa 18556491  T
Q  224 -atcttcaccctcaggtgga 242  Q
     | ||||||||| |||||||    
T  18556492 caacttcacccttaggtgga 18556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 54979933 - 54980051
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa- 223  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| |||||||||||||||     
T  54979933 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaac 54980032  T
Q  224 atcttcaccctcaggtgga 242  Q
    | ||||||||| |||||||    
T  54980033 aacttcacccttaggtgga 54980051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 31725346 - 31725433
Alignment:
Q  197 tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattg 286  Q
    |||| ||||| ||||||| |||||||||||||||| || |||||||||| || ||||||||||||||||||  |||| ||||||||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattg 31725433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
Q  124 acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 223  Q
    ||||||||||||||||||||||||||||||| | |  ||  |||||||||||||| | | ||| |||||||  ||||||||||| ||||||  |||||||    
T  17645897 acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa 17645800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 44 - 294
Target Start/End: Original strand, 31151925 - 31152176
Alignment:
Q  44 ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 143  Q
    ||||||||||||||| || ||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  31151925 ttgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaa 31152024  T
Q  144 accttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtgga 242  Q
    |||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31152025 accttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatgga 31152124  T
Q  243 cctaactatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||| ||||    
T  31152125 cctaactacgtatctaaatttatagatacaactctcacaaattggcttacta 31152176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 22981621 - 22981504
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 224  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| |    
T  22981621 aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaaca 22981522  T
Q  225 tcttcaccctcaggtgga 242  Q
     ||||||||| |||||||    
T  22981521 acttcacccttaggtgga 22981504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 23806787 - 23806904
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 224  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| |    
T  23806787 aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaaca 23806886  T
Q  225 tcttcaccctcaggtgga 242  Q
     ||||||||| |||||||    
T  23806887 acttcacccttaggtgga 23806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 1111378 - 1111524
Alignment:
Q  121 acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat 219  Q
    ||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | |  |||||||||||| ||||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat 1111477  T
Q  220 acaaatcttcaccctcaggtggacctaactatgtatctcaatttgta 266  Q
    |||||  |||||||| | ||  |||||||||||||||||||||||||    
T  1111478 acaaactttcacccttacgtaaacctaactatgtatctcaatttgta 1111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 22981712 - 22981647
Alignment:
Q  43 gttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgt 110  Q
    |||||||||||||| | || ||||||||| |||||||||||| |||| ||||||  ||||||||||||    
T  22981712 gttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt 22981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 23806696 - 23806761
Alignment:
Q  43 gttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgt 110  Q
    |||||||||||||| | || ||||||||| |||||||||||| |||| ||||||  ||||||||||||    
T  23806696 gttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt 23806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 29706853 - 29707069
Alignment:
Q  44 ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 143  Q
    ||||||| |||||||  | ||||||| ||| ||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||||| | |||||    
T  29706853 ttgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaa 29706952  T
Q  144 accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 243  Q
    ||||||||||| ||||||||||| || |||||||| | ||  |||||||||||||||||||||||||||||| |  | |||||||||||||| |||||||    
T  29706953 accttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggac 29707052  T
Q  244 ctaactatgtatctcaa 260  Q
    |||||||||||||||||    
T  29707053 ctaactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata 220  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||| ||||||  ||    | ||||||||  ||||||||||||||||||||||||    
T  27642225 aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata 27642132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 26516 - 26751
Alignment:
Q  63 taatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa 162  Q
    |||| |||||||| |||||||| ||||||| |||||||||| ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  163 ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc 256  Q
    |||||||| ||||||||| |  ||||||||||  |||||| |||| |||| | |||||||| | || |||||| ||||||| || ||||     | | ||    
T  26614 ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc 26713  T
Q  257 tcaatttgtagatacaactctcacaaattggctcacta 294  Q
    ||||||||||   |  ||||||||||||||||||||||    
T  26714 tcaatttgtaaggaacactctcacaaattggctcacta 26751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 25857131 - 25857317
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||  ||||||||||| ||||           |||||| |    ||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt 25857225  T
Q  134 agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 223  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  25857226 agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa 25857317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt 4842744  T
Q  134 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 229  Q
    |||||||||||||||||||||||||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||| ||||||||| | ||||    
T  4842745 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc 4842844  T
Q  230 accctcaggtgga 242  Q
    ||||| |||||||    
T  4842845 acccttaggtgga 4842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
Q  126 aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 223  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa 13465145  T
Q  224 -atcttcaccctcaggtgga 242  Q
     |  ||||||||||||||||    
T  13465146 caagttcaccctcaggtgga 13465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 4835575 - 4835839
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc 136  Q
    |||||||||||||| || ||||||||||||||| |||||| ||||||||||||  || |||||||| ||||  | ||      ||| | | |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc 4835672  T
Q  137 gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 232  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||| ||| | |||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc 4835772  T
Q  233 ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    || ||||||| || ||     ||| | ||||||||||||   |  ||||||||||||||||||||||    
T  4835773 cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcacta 4835839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 223  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |   |||||||||  || |||| ||| ||||||| |||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa 27341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
Q  119 acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa 218  Q
    |||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| |||||  |   |||||||||  ||||||||||| ||||||| ||    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa 17845870  T
Q  219 tacaa-atcttcaccctcaggtg 240  Q
    ||||| | ||||||||| |||||    
T  17845869 tacaacaacttcacccttaggtg 17845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 224  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||| |  |  |||||||||| | ||||||||||| ||||| ||||||||| |    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca 24379469  T
Q  225 tcttcaccctcaggtgga 242  Q
     ||||||||| |||||||    
T  24379470 acttcacccttaggtgga 24379487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 8252686 - 8252842
Alignment:
Q  136 cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc 235  Q
    |||||||||||||||||| |||||||||| |      |||||| |||||| ||||||| ||  || | ||||||||| ||||||||||| ||||| | |     
T  8252686 cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt 8252779  T
Q  236 aggtggacctaacta----tgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    || ||||| ||| ||    ||||||||||||||||||||||||| ||| |||||| |||||||    
T  8252780 agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcacta 8252842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 24380164 - 24380113
Alignment:
Q  44 ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggca 95  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  24380164 ttgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa 194  Q
    ||||||| |||||||||||||||||||| ||| || ||||||||||||||||||   |||||||||||    
T  38994151 aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa 38994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 24379297 - 24379347
Alignment:
Q  63 taatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat 115  Q
    ||||||| ||||||||||||||||||||||||||  ||| |||||||||||||    
T  24379297 taatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat 24379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 294
Target Start/End: Complemental strand, 41481816 - 41481549
Alignment:
Q  44 ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 132  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||| ||||  ||||||||||| ||||           |||||| || | |||||    
T  41481816 ttgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaattt 41481720  T
Q  133 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt 228  Q
    |||||||||||||||||||||| |||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||    
T  41481719 tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt 41481620  T
Q  229 caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcacta 294  Q
    |||||| ||||||| || ||     ||| | ||||||||||||   |  ||||||||||||||||||||||    
T  41481619 cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcacta 41481549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 36167813 - 36167596
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 36167717  T
Q  134 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 229  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  36167716 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 36167618  T
Q  230 accctcaggtggacctaactat 251  Q
    ||||| ||||||| || |||||    
T  36167617 acccttaggtggatctcactat 36167596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 18951211 - 18951326
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa- 223  Q
    ||||||||| |||||||||||||||||||||| ||||  |||||||||| ||||  |  || ||||||| | ||||||||||| |||||||||||||||     
T  18951211 aattttagcatggaaaaccttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaac 18951310  T
Q  224 atcttcaccctcaggt 239  Q
    | ||||||||| ||||    
T  18951311 aacttcacccttaggt 18951326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 18951129 - 18951185
Alignment:
Q  50 ggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaac 108  Q
    ||||||||| || |||||| ||||||||||||||| |||||||||||  ||||||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcac--tagcggaaac 18951185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 31206685 - 31206636
Alignment:
Q  84 ttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaatttt 133  Q
    ||||||||  ||||| | ||||||||||||||||||| ||||||||||||    
T  31206685 ttaaaataaacacttaaacggaaacgtaaaatgacacccaacaaaatttt 31206636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||||||||||  || |||||||||| ||||||||||| ||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 2840  T
Q  134 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 229  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  2839 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 2740  T
Q  230 accctcaggtgga 242  Q
    ||||| |||||||    
T  2739 acccttaggtgga 2727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 251
Target Start/End: Original strand, 9757212 - 9757431
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 133  Q
    |||||| ||||||| || |||||||| ||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 9757308  T
Q  134 agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt 228  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||| |  ||||||||||     ||||||||||| ||||||||||||||| | |||    
T  9757309 agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt 9757408  T
Q  229 caccctcaggtggacctaactat 251  Q
    |||||| ||||||| || |||||    
T  9757409 cacccttaggtggatctcactat 9757431  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  126 aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 223  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at 225  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| |     
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa 42683023  T
Q  226 cttcaccctcaggtg 240  Q
    ||||||||| |||||    
T  42683024 cttcacccttaggtg 42683038  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
Q  130 ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 223  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||  | ||||||||  |||||| ||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa 37037942  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 342306 - 342404
Alignment:
Q  128 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 223  Q
    |||||||||||| |||||||||||||| |||| || |||| ||||||||||| || |  |||||||||| | ||||||||||| |||||||||||||||    
T  342306 aattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa 342404  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 342217 - 342269
Alignment:
Q  45 tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcact 97  Q
    |||||| ||||||| || |||||| ||||||||||||||| ||||||||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact 342269  T

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