View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17482_low_1 (Length: 434)
Name: NF17482_low_1
Description: NF17482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17482_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 9471770 - 9471352
Alignment:
| Q |
9 |
gagaagaaacaagcggatccggttcatcgacccatcactaggtgaggaattgatgatttaagtttctggtttggttcatagaccctttagtgtgaattga |
108 |
Q |
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| T |
9471770 |
gagaagaaacaagcggatccggttcatcgacccatcactaggtgaggaattgatgatttaagtttctggtttggttcatagaccctttagtgtgatttga |
9471671 |
T |
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| Q |
109 |
atttctggattggttgaccataagaaaacacaaagatactgagacaagtgtttgaattttgcaattttaataaccaaaacagaaattatgtagcattgac |
208 |
Q |
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| T |
9471670 |
atttctggattggttgaccataagaaaacacaaagatactgagacaagtgtttgaattttgcaattttaaaaaccaaaacagaaattatgtagcattgac |
9471571 |
T |
|
| Q |
209 |
aattcagattattggaatgtttagtgttcgacagaagtccgacgccacattatcagatgtggttaaattcaattattgttattttcttaaatgaatttgt |
308 |
Q |
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| T |
9471570 |
aattcagattattggaatgtttagtgttcgacagaagtccgacgccacattatcagatgtggttaaattcaattattgttattttcttaaatgaatttgt |
9471471 |
T |
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| Q |
309 |
catcggtgtctacatctacatgccacggtgtctctgtcgtgtcaggtgtctgtgttgtagatccgaaataatggaatttttcatcttattaccatgcaag |
408 |
Q |
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| T |
9471470 |
catcggtgtctacatctacatgccacggtgtctctgtcgtgtcaggtgtctgcgttatagatccgaaataatggaatttttcatcttattaccatgcaag |
9471371 |
T |
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| Q |
409 |
ttttgttaaaatgatgatg |
427 |
Q |
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| T |
9471370 |
ttttgttaaaatgatgatg |
9471352 |
T |
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