View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17482_low_3 (Length: 303)
Name: NF17482_low_3
Description: NF17482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17482_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 51172535 - 51172621
Alignment:
| Q |
198 |
gagcagtgtagacaagcaaaactcacttattcagggaggttcacagcagatgtgtgttttaaatacgatgacggcggggctatttta |
284 |
Q |
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| T |
51172535 |
gagcagtgtagacaagcaaaactcacttattcagggaggttcactgcagatgtgtgttttaaatacgatgacagcgaggctatttta |
51172621 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 51172347 - 51172422
Alignment:
| Q |
18 |
ctcccaaaatactctcgcctcagaaggatggaatcgccaagacaacgcgcaaaactctgtatccgtttgaagcaag |
93 |
Q |
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| T |
51172347 |
ctcccaaaatcctctcgcctcagaaggatggaatcgccaagacaacgcgcaaaactctgtatccgtttgaagcaag |
51172422 |
T |
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